Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21]
883,920 sequences; 1,404,220,341 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq24600 140 3e-28
seq311453 120 3e-22
seq302148 86.0 5e-12
>seq24600
Length=2898
Score = 140 bits (154), Expect = 3e-28
Identities = 169/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| || || |||| |||||| | ||||| || || ||||| ||
Sbjct 665 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATTACCCTGGAGGTGGAGCCAAGT 606
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | ||||||| || || ||||| || ||||| |||||||| || || |||||
Sbjct 605 GACACCATTGAGAATGTGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCTCCTGATCAG 546
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||| | || || | |||||||| ||||||||||| | ||| | || || ||||||
Sbjct 545 CAGAGGTTGATCTTTGCCGGCAAGCAATTGGAAGATGGCCGCACCCTCTCTGACTACAAC 486
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| || |||||||| ||| | ||| | || ||||| || ||||||| ||
Sbjct 485 ATCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTGAGGGGTGGGAT 436
Score = 111 bits (122), Expect = 1e-19
Identities = 147/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| || || |||| || ||| | ||||| || || ||||| ||
Sbjct 204 ATGCAGATCTTTGTGAAGACCTTGACTGGGAAGACCATTACCCTAGAGGTGGAGCCAAGT 145
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | ||||||| || || ||||| || |||||||||||||| || || || |||
Sbjct 144 GACACCATTGAGAATGTGAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCTGACCAA 85
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||| | | || | || || || || |||||||| | ||| |||| || ||||||
Sbjct 84 CAGAGGCTGATCTTTGCTGGAAAGCAGCTGGAAGACGGCCGCACCCTTTCTGACTACAAC 25
Query 27168 ATTCAAAAGGAGTCGACCTTACAT 27191
|| || |||||||| ||| | |||
Sbjct 24 ATCCAGAAGGAGTCCACCCTCCAT 1
>seq311453
Length=2514
Score = 120 bits (132), Expect = 3e-22
Identities = 165/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||| ||||| || || |||| || || | || || || || ||||||||
Sbjct 391 CATGCAGATCTTTGTCAAGACCTTGACTGGAAAAACCATCACCCTGGAGGTGGAACCCAG 332
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
||| | ||||| | ||||| || || || |||||||||||||| || ||||| ||
Sbjct 331 TGACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCCGACCA 272
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
||| | | || | || |||||||| |||||||| | ||| | || || |||||
Sbjct 271 GCAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGACGGCCGCACCCTCTCTGACTACAA 212
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||| || |||||||| || | || |||| | ||| || ||||||||||
Sbjct 211 CATCCAGAAGGAGTCCACTCTCCACCTGGTCCTCCGTCTGAGGGGTGGCAT 161
Score = 118 bits (130), Expect = 9e-22
Identities = 164/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| || || ||||||| || | || || || || ||||| ||
Sbjct 618 ATGCAGATCTTTGTGAAGACCTTGACCGGGAAAACCATCACCCTAGAGGTGGAGCCCAGT 559
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || |||| ||||| || || |||||||| |||||||| || ||||| ||
Sbjct 558 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCCGACCAG 499
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||| | | || | || || || ||||||||||| | || | || || ||||||
Sbjct 498 CAGAGGCTGATCTTTGCTGGGAAGCAATTGGAAGATGGCCGCACTCTCTCAGACTACAAC 439
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| |||||||| || ||| | ||| | || ||||| || ||||||||||
Sbjct 438 ATCCAAAAGGAATCCACCCTCCATCTTGTCCTGCGTCTGAGGGGTGGCAT 389
>seq302148
Length=1178
Score = 86.0 bits (94), Expect = 5e-12
Identities = 86/112 (77%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 135648 TAGGTTGTATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAAAGTGT 135707
|||| || |||||||| || || || | ||||||||||||||| ||||| || |
Sbjct 552 TAGGCTGCATGTGGTCCATCTGTGGGATCCACGATCAAGGATGGGCTGAGCGTGCCGTCT 611
Query 135708 TTGGCAAGATTCGCTATATGAACTATGACGGTTGTACAAGAAAATTTAATGT 135759
|||||||||| ||||| ||||| |||| |||||| | || || ||| ||||
Sbjct 612 TTGGCAAGATCCGCTACATGAATTATGCCGGTTGCAAGAGGAAGTTTGATGT 663
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430236287460560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |