Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq139421 89.7 5e-13 >seq139421 Length=9021 Score = 89.7 bits (98), Expect = 5e-13 Identities = 113/153 (74%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 6617 ACATGAGCGATCAT-GTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675 ||||| || ||||| ||| || || || | ||||||||| |||||||| || || || | Sbjct 4543 ACATGGGCAATCATTGTA-GTAAGAAGTGAGTAACTAGCTATGTTGAAAGGAACTCCCAG 4601 Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735 ||||||||||| || || ||||| | ||| || || || || ||||| | ||| || Sbjct 4602 TCCCATGTCTCCAGAACGCTGATACAACTGACAAGAGAGTTCACCATTTAAAATGTAAAA 4661 Query 6736 TTGGCAGAGGGTGTGGCACGGGGGGAGCGCCAT 6768 |||||||| | ||||| || || | ||||| Sbjct 4662 CTGGCAGAGAGCATGGCATGGAGGTAAAGCCAT 4694 Score = 89.7 bits (98), Expect = 5e-13 Identities = 113/153 (74%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 34577 ATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCC 34636 ||||| | || || ||||| | |||||||| || ||| | ||||| || || || Sbjct 4694 ATGGCTTTACCTCCATGCCATGCTCTCTGCCAGTTTTACATTTTAAATGGTGAACTCTCT 4635 Query 34637 TGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGT 34696 || ||| | ||||| || || ||||||||||| | || || || |||||||| |||||| Sbjct 4634 TGTCAGTTGTATCAGCGTTCTGGAGACATGGGACTGGGAGTTCCTTTCAACATAGCTAGT 4575 Query 34697 TACGCTCTGCTCACGTAC-ATGATCGCTCATGT 34728 ||| | || || || ||| ||||| || ||||| Sbjct 4574 TACTCACTTCTTAC-TACAATGATTGCCCATGT 4543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 443309548742400