Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21]
883,920 sequences; 1,404,220,341 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq139421 89.7 5e-13
>seq139421
Length=9021
Score = 89.7 bits (98), Expect = 5e-13
Identities = 113/153 (74%), Gaps = 2/153 (1%)
Strand=Plus/Plus
Query 6617 ACATGAGCGATCAT-GTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675
||||| || ||||| ||| || || || | ||||||||| |||||||| || || || |
Sbjct 4543 ACATGGGCAATCATTGTA-GTAAGAAGTGAGTAACTAGCTATGTTGAAAGGAACTCCCAG 4601
Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735
||||||||||| || || ||||| | ||| || || || || ||||| | ||| ||
Sbjct 4602 TCCCATGTCTCCAGAACGCTGATACAACTGACAAGAGAGTTCACCATTTAAAATGTAAAA 4661
Query 6736 TTGGCAGAGGGTGTGGCACGGGGGGAGCGCCAT 6768
|||||||| | ||||| || || | |||||
Sbjct 4662 CTGGCAGAGAGCATGGCATGGAGGTAAAGCCAT 4694
Score = 89.7 bits (98), Expect = 5e-13
Identities = 113/153 (74%), Gaps = 2/153 (1%)
Strand=Plus/Minus
Query 34577 ATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCC 34636
||||| | || || ||||| | |||||||| || ||| | ||||| || || ||
Sbjct 4694 ATGGCTTTACCTCCATGCCATGCTCTCTGCCAGTTTTACATTTTAAATGGTGAACTCTCT 4635
Query 34637 TGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGT 34696
|| ||| | ||||| || || ||||||||||| | || || || |||||||| ||||||
Sbjct 4634 TGTCAGTTGTATCAGCGTTCTGGAGACATGGGACTGGGAGTTCCTTTCAACATAGCTAGT 4575
Query 34697 TACGCTCTGCTCACGTAC-ATGATCGCTCATGT 34728
||| | || || || ||| ||||| || |||||
Sbjct 4574 TACTCACTTCTTAC-TACAATGATTGCCCATGT 4543
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 443309548742400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |