Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21]
883,920 sequences; 1,404,220,341 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq311453 167 5e-36
seq24600 147 5e-30
seq433667 127 5e-24
seq99924 105 2e-17
>seq311453
Length=2514
Score = 167 bits (184), Expect = 5e-36
Identities = 164/212 (77%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| ||||| ||||||||||| || |||||||| || || | ||||| | || |||
Sbjct 179 AGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCGTCT 238
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||||||| ||||| || ||||| || | || ||||| ||||||| ||||| ||||||
Sbjct 239 TCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCTTTGTCC 298
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || || ||||| ||||||||| | ||| ||||| || ||||| ||
Sbjct 299 TGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTT 358
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| || | ||||| ||||| | ||||||
Sbjct 359 TTTCCAGTCAAGGTCTTGACAAAGATCTGCAT 390
Score = 145 bits (160), Expect = 2e-29
Identities = 161/215 (75%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|||||||| || || ||||| || ||||||||||| || || | || || | ||||||
Sbjct 407 AGGACAAGATGGAGGGTGGATTCCTTTTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCT 466
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||| ||||| || || ||||| || | || ||||| ||||| | |||||||||||
Sbjct 467 TCCAATTGCTTCCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTGTCT 526
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || || || |||||||||||| | || ||||| || ||||| ||
Sbjct 527 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTT 586
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
|| || || | ||||| ||||| | |||||||||
Sbjct 587 TTCCCGGTCAAGGTCTTCACAAAGATCTGCATTTT 621
Score = 123 bits (136), Expect = 6e-23
Identities = 122/158 (77%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016
|||||||||||||| ||||| || ||||| || | || ||||| ||||||| ||||||
Sbjct 5 CCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCC 64
Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076
|||||||||||||| || |||||||| ||||||||| | || ||||| || ||
Sbjct 65 TTGTCCTGGATCTTGGCCTTGACGTTTTCAATGGTGTCACTGGGCTCCACCTCAAGTGTT 124
Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || ||||| || | ||||| ||||| | |||||
Sbjct 125 ATGGTTTTTCCGGTCAAGGTCTTGACAAAGATTTGCAT 162
>seq24600
Length=2898
Score = 147 bits (162), Expect = 5e-30
Identities = 157/206 (76%), Gaps = 6/206 (3%)
Strand=Plus/Plus
Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971
|| || |||||||| || |||||||| || || | |||||| | || ||||||||||||
Sbjct 2 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCGTCTTCCAGCTGC 61
Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031
|| || || ||||| || | |||||||||||||||| ||||| ||||||||||| ||
Sbjct 62 TTTCCAGCAAAGATCAGCCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTCCTGGATTTTG 121
Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATCGTCTTTCCC 211088
||||| || || ||||||||| ||| || ||||| || || || ||||| ||
Sbjct 122 GCCTTCACATTCTCAATGGTGTCA---CTTGGCTCCACCTCTAGGGTAATGGTCTTCCCA 178
Query 211089 GTGAGAGTCTTTACAAACACCTGCAT 211114
|| | ||||| ||||| | ||||||
Sbjct 179 GTCAAGGTCTTCACAAAGATCTGCAT 204
Score = 147 bits (162), Expect = 5e-30
Identities = 164/218 (75%), Gaps = 6/218 (3%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|||||||| || || |||||||| || |||||||| || || | ||||| | ||||||
Sbjct 454 AGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCT 513
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||| |||||||| || ||||| | | || || |||||||||| ||||||||||||
Sbjct 514 TCCAATTGCTTGCCGGCAAAGATCAACCTCTGCTGATCAGGAGGAATGCCTTCCTTGTCC 573
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATC 211079
||||| || ||||| || || ||||||||| ||| || ||||| || || ||
Sbjct 574 TGGATTTTGGCCTTCACATTCTCAATGGTGTCA---CTTGGCTCCACCTCCAGGGTAATG 630
Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
||||| || || | ||||| ||||| | |||||| ||
Sbjct 631 GTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATCTT 668
>seq433667
Length=2244
Score = 127 bits (140), Expect = 5e-24
Identities = 118/150 (79%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| ||||| || |||||||| || |||||||| || || | ||||| | ||||||
Sbjct 150 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTACGGCCATCT 91
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||||||| ||||| || ||||| || | || || || ||||||| ||||||||||||
Sbjct 90 TCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCC 31
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTG 211052
|||||||| || || || |||||||||
Sbjct 30 TGGATCTTGGCCTTGACATTCTCGATGGTG 1
>seq99924
Length=25621
Score = 105 bits (116), Expect = 2e-17
Identities = 100/128 (78%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 210924 TCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAG 210983
||||| |||||||| || || | ||| || | |||||| |||||||||| || || |||
Sbjct 23106 TCTTTCTGGATGTTGTAGTCAGAAAGTGTGCAGCCATCTGCCAGCTGCTTTCCAGCAAAG 23047
Query 210984 ATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTT 211043
|| || | |||||||||| ||||| ||||||||||||||||| || ||||| ||
Sbjct 23046 ATCAGCCTCTGTTGGTCAGCAGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTC 22987
Query 211044 TCGATGGT 211051
|| |||||
Sbjct 22986 TCAATGGT 22979
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1146024342790800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |