Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq311453 167 5e-36 seq24600 147 5e-30 seq433667 127 5e-24 seq99924 105 2e-17 >seq311453 Length=2514 Score = 167 bits (184), Expect = 5e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| ||||||||||| || |||||||| || || | ||||| | || ||| Sbjct 179 AGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCGTCT 238 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||| ||||| || ||||| || | || ||||| ||||||| ||||| |||||| Sbjct 239 TCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCTTTGTCC 298 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || ||||| ||||||||| | ||| ||||| || ||||| || Sbjct 299 TGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTT 358 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || | ||||| ||||| | |||||| Sbjct 359 TTTCCAGTCAAGGTCTTGACAAAGATCTGCAT 390 Score = 145 bits (160), Expect = 2e-29 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || || ||||| || ||||||||||| || || | || || | |||||| Sbjct 407 AGGACAAGATGGAGGGTGGATTCCTTTTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCT 466 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||||| || || ||||| || | || ||||| ||||| | ||||||||||| Sbjct 467 TCCAATTGCTTCCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTGTCT 526 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || |||||||||||| | || ||||| || ||||| || Sbjct 527 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTT 586 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || | ||||| ||||| | ||||||||| Sbjct 587 TTCCCGGTCAAGGTCTTCACAAAGATCTGCATTTT 621 Score = 123 bits (136), Expect = 6e-23 Identities = 122/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 |||||||||||||| ||||| || ||||| || | || ||||| ||||||| |||||| Sbjct 5 CCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCC 64 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 |||||||||||||| || |||||||| ||||||||| | || ||||| || || Sbjct 65 TTGTCCTGGATCTTGGCCTTGACGTTTTCAATGGTGTCACTGGGCTCCACCTCAAGTGTT 124 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || | ||||| ||||| | ||||| Sbjct 125 ATGGTTTTTCCGGTCAAGGTCTTGACAAAGATTTGCAT 162 >seq24600 Length=2898 Score = 147 bits (162), Expect = 5e-30 Identities = 157/206 (76%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || |||||||| || |||||||| || || | |||||| | || |||||||||||| Sbjct 2 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCGTCTTCCAGCTGC 61 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || || ||||| || | |||||||||||||||| ||||| ||||||||||| || Sbjct 62 TTTCCAGCAAAGATCAGCCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTCCTGGATTTTG 121 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATCGTCTTTCCC 211088 ||||| || || ||||||||| ||| || ||||| || || || ||||| || Sbjct 122 GCCTTCACATTCTCAATGGTGTCA---CTTGGCTCCACCTCTAGGGTAATGGTCTTCCCA 178 Query 211089 GTGAGAGTCTTTACAAACACCTGCAT 211114 || | ||||| ||||| | |||||| Sbjct 179 GTCAAGGTCTTCACAAAGATCTGCAT 204 Score = 147 bits (162), Expect = 5e-30 Identities = 164/218 (75%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || || |||||||| || |||||||| || || | ||||| | |||||| Sbjct 454 AGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCT 513 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| |||||||| || ||||| | | || || |||||||||| |||||||||||| Sbjct 514 TCCAATTGCTTGCCGGCAAAGATCAACCTCTGCTGATCAGGAGGAATGCCTTCCTTGTCC 573 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATC 211079 ||||| || ||||| || || ||||||||| ||| || ||||| || || || Sbjct 574 TGGATTTTGGCCTTCACATTCTCAATGGTGTCA---CTTGGCTCCACCTCCAGGGTAATG 630 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| || || | ||||| ||||| | |||||| || Sbjct 631 GTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATCTT 668 >seq433667 Length=2244 Score = 127 bits (140), Expect = 5e-24 Identities = 118/150 (79%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || |||||||| || |||||||| || || | ||||| | |||||| Sbjct 150 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTACGGCCATCT 91 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||| ||||| || ||||| || | || || || ||||||| |||||||||||| Sbjct 90 TCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCC 31 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTG 211052 |||||||| || || || ||||||||| Sbjct 30 TGGATCTTGGCCTTGACATTCTCGATGGTG 1 >seq99924 Length=25621 Score = 105 bits (116), Expect = 2e-17 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 210924 TCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAG 210983 ||||| |||||||| || || | ||| || | |||||| |||||||||| || || ||| Sbjct 23106 TCTTTCTGGATGTTGTAGTCAGAAAGTGTGCAGCCATCTGCCAGCTGCTTTCCAGCAAAG 23047 Query 210984 ATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTT 211043 || || | |||||||||| ||||| ||||||||||||||||| || ||||| || Sbjct 23046 ATCAGCCTCTGTTGGTCAGCAGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTC 22987 Query 211044 TCGATGGT 211051 || ||||| Sbjct 22986 TCAATGGT 22979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1146024342790800