Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21]
883,920 sequences; 1,404,220,341 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq15708 125 6e-24
seq236318 118 9e-22
>seq15708
Length=5494
Score = 125 bits (138), Expect = 6e-24
Identities = 102/124 (82%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 4570 CTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTT 4629
|||| ||||||||||| |||||||| || || || | || |||||||| |||||||| |
Sbjct 5431 CTTCATCTCTGCTAATAAGTTCGTTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCT 5372
Query 4630 TAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACG 4689
| ||||||||||| || ||||| | ||||||||||| |||||||| || || |||||||
Sbjct 5371 TGAGCCAAAATATGGCTGCAAAAGCACCAGAAAAGAAGATGCCTTCGACAGCAGCAAACG 5312
Query 4690 CTAC 4693
| ||
Sbjct 5311 CAAC 5308
>seq236318
Length=20466
Score = 118 bits (130), Expect = 9e-22
Identities = 109/137 (80%), Gaps = 1/137 (1%)
Strand=Plus/Minus
Query 4559 ACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAA 4618
|||| || |||| | ||||| |||||||| || |||||||| || | ||| |||||||
Sbjct 6260 ACAAGCCATACCT-CATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCAGGCATTAG 6202
Query 4619 ACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTAC 4678
||||| || || ||||||||||| | ||||| || ||||||||||| || ||||| ||
Sbjct 6201 ACCTCGTTTCTTCAGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAAC 6142
Query 4679 GGCGGCAAACGCTACTA 4695
|| ||||| |||||||
Sbjct 6141 TGCAGCAAATGCTACTA 6125
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422449090745360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |