Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq236318 120 4e-22 seq15708 105 9e-18 >seq236318 Length=20466 Score = 120 bits (132), Expect = 4e-22 Identities = 98/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||||||||| | || |||||||| || || || |||||||| || ||||| || Sbjct 6248 TCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCAGGCATTAGACCTCGTTTCTTC 6189 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||||||||||| || ||||| ||||||||||| || ||||| || || |||||||| Sbjct 6188 AGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATGC 6130 Score = 111 bits (122), Expect = 2e-19 Identities = 111/141 (79%), Gaps = 5/141 (4%) Strand=Plus/Minus Query 47793 CTTTAAAAGTCAACATCTAAAGAAAAATGA-TTATCTTCTTGA---GACATAACTCCCAT 47848 ||||| || || |||| |||| || ||| |||||| | || ||||| || ||||| Sbjct 7755 CTTTAGAAATCTGCATCCAAAGTGAA-TGAGTTATCTGCAGGACTTGACATCACACCCAT 7697 Query 47849 TTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 47908 |||||||||| || |||||||| || || |||||||| |||||||||| || ||||| Sbjct 7696 CCTTTGATATTCTCCTACACGTTTTTCAAAGAAATTAGTCTTGCCTTCCAGAGAGATATT 7637 Query 47909 TTCCATAAAATCAAATGGATT 47929 |||||||| ||||||||||| Sbjct 7636 CTCCATAAAGTCAAATGGATT 7616 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 48401 ATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGC 48460 ||| |||| ||||||||| || | | |||||||||||| || |||||||| || || || Sbjct 4407 ATCCTTAATGTAAGTATCAATAAGTAAACTATACATTTCTGAATGAATATTCTCCATGGC 4348 Query 48461 CATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTA 48501 ||||| || || || ||||| | |||||||||| |||| Sbjct 4347 AATCTGGAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTA 4307 >seq15708 Length=5494 Score = 105 bits (116), Expect = 9e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 48163 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTT 48222 |||||||||| ||||| | |||||| || || || || || ||||||| || | || | Sbjct 5431 CTTCATCTCTGCTAATAAGTTCGTTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCT 5372 Query 48223 TGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATG 48282 ||||||||||||| || || |||| ||||||||||| |||||||| || || ||||| | Sbjct 5371 TGAGCCAAAATATGGCTGCAAAAGCACCAGAAAAGAAGATGCCTTCGACAGCAGCAAACG 5312 Query 48283 C 48283 | Sbjct 5311 C 5311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686993404428800