Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21]
883,920 sequences; 1,404,220,341 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq236318 120 4e-22
seq15708 105 9e-18
>seq236318
Length=20466
Score = 120 bits (132), Expect = 4e-22
Identities = 98/119 (82%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224
|||||||||||||| | || |||||||| || || || |||||||| || ||||| ||
Sbjct 6248 TCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCAGGCATTAGACCTCGTTTCTTC 6189
Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283
||||||||||||| || ||||| ||||||||||| || ||||| || || ||||||||
Sbjct 6188 AGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATGC 6130
Score = 111 bits (122), Expect = 2e-19
Identities = 111/141 (79%), Gaps = 5/141 (4%)
Strand=Plus/Minus
Query 47793 CTTTAAAAGTCAACATCTAAAGAAAAATGA-TTATCTTCTTGA---GACATAACTCCCAT 47848
||||| || || |||| |||| || ||| |||||| | || ||||| || |||||
Sbjct 7755 CTTTAGAAATCTGCATCCAAAGTGAA-TGAGTTATCTGCAGGACTTGACATCACACCCAT 7697
Query 47849 TTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 47908
|||||||||| || |||||||| || || |||||||| |||||||||| || |||||
Sbjct 7696 CCTTTGATATTCTCCTACACGTTTTTCAAAGAAATTAGTCTTGCCTTCCAGAGAGATATT 7637
Query 47909 TTCCATAAAATCAAATGGATT 47929
|||||||| |||||||||||
Sbjct 7636 CTCCATAAAGTCAAATGGATT 7616
Score = 84.2 bits (92), Expect = 3e-11
Identities = 79/101 (78%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 48401 ATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGC 48460
||| |||| ||||||||| || | | |||||||||||| || |||||||| || || ||
Sbjct 4407 ATCCTTAATGTAAGTATCAATAAGTAAACTATACATTTCTGAATGAATATTCTCCATGGC 4348
Query 48461 CATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTA 48501
||||| || || || ||||| | |||||||||| ||||
Sbjct 4347 AATCTGGAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTA 4307
>seq15708
Length=5494
Score = 105 bits (116), Expect = 9e-18
Identities = 96/121 (79%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 48163 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTT 48222
|||||||||| ||||| | |||||| || || || || || ||||||| || | || |
Sbjct 5431 CTTCATCTCTGCTAATAAGTTCGTTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCT 5372
Query 48223 TGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATG 48282
||||||||||||| || || |||| ||||||||||| |||||||| || || ||||| |
Sbjct 5371 TGAGCCAAAATATGGCTGCAAAAGCACCAGAAAAGAAGATGCCTTCGACAGCAGCAAACG 5312
Query 48283 C 48283
|
Sbjct 5311 C 5311
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686993404428800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |