Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq15708 114 2e-20 seq236318 113 6e-20 >seq15708 Length=5494 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711 |||||||||| ||||| | |||||| || || || || || ||||||| || | ||| | Sbjct 5431 CTTCATCTCTGCTAATAAGTTCGTTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCT 5372 Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771 ||||||||||||| || || |||| ||||||||||| |||||||| ||||| || || | Sbjct 5371 TGAGCCAAAATATGGCTGCAAAAGCACCAGAAAAGAAGATGCCTTCGACAGCAGCAAACG 5312 Query 46772 CGACAAGTCTCTCTCC 46787 | || | ||| || || Sbjct 5311 CAACCACTCTTTCACC 5296 >seq236318 Length=20466 Score = 113 bits (124), Expect = 6e-20 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||||||||| | || |||||||| || || ||||||||||| || || || || Sbjct 6248 TCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCAGGCATTAGACCTCGTTTCTTC 6189 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||||||||| | || ||||| ||||||||||| || ||||| || || || ||||| Sbjct 6188 AGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATGCT 6129 Query 46774 AC 46775 || Sbjct 6128 AC 6127 Score = 105 bits (116), Expect = 9e-18 Identities = 110/141 (78%), Gaps = 5/141 (4%) Strand=Plus/Minus Query 46282 CTTTAAAAGTCGACATCTAAAGAAAAATGA-TTATCTTCTTG---TGACATAACTCCCAT 46337 ||||| || || |||| |||| || ||| |||||| | | |||||| || ||||| Sbjct 7755 CTTTAGAAATCTGCATCCAAAGTGAA-TGAGTTATCTGCAGGACTTGACATCACACCCAT 7697 Query 46338 TTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 46397 |||| ||||| ||||||||||| || || |||||||| |||||||||| || ||||| Sbjct 7696 CCTTTGATATTCTCCTACACGTTTTTCAAAGAAATTAGTCTTGCCTTCCAGAGAGATATT 7637 Query 46398 TTCCATAAAATCAAACGGATT 46418 |||||||| ||||| ||||| Sbjct 7636 CTCCATAAAGTCAAATGGATT 7616 Score = 87.8 bits (96), Expect = 3e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 47128 ACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGA 47187 || ||||||||||||||||| || ||||||||||| || ||||| | ||| || ||| | Sbjct 883 ACCTCTTCAGCTGTCCAGAAGGATGCCTCTGCTTTCTTGTACATTTGCCAGATGTCATGG 824 Query 47188 TATTGGATCGGAAAAATAACAAA 47210 ||||| || |||||||| ||||| Sbjct 823 TATTGAATAGGAAAAATGACAAA 801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 705057187814400