Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq311453 132 1e-25 seq24600 111 4e-19 >seq311453 Length=2514 Score = 132 bits (146), Expect = 1e-25 Identities = 161/218 (74%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||||||||| || || || || |||||||||||||| || | | ||| | |||||| Sbjct 407 AGGACAAGATGGAGGGTGGATTCCTTTTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCT 466 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | ||||| || ||||| |||||||||||||| | | ||| |||||||| ||| Sbjct 467 TCCAATTGCTTCCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTGTCT 526 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || |||||| |||| | | |||| ||| ||| || || || || || Sbjct 527 TGGATCTTGGCCTTGACATTCTCGATGGTGTC---ACTGGGCTCCACCTCTAGGGTGATG 583 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| || || | |||||||| |||| ||||||||| Sbjct 584 GTTTTCCCGGTCAAGGTCTTCACAAAGATCTGCATTTT 621 Score = 96.9 bits (106), Expect = 8e-15 Identities = 157/225 (70%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| || | |||||| || || ||||| ||||| || ||||||||||| || | | || Sbjct 169 CCTCAGACGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGT 228 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | || ||||| || ||| || || ||||| |||||||||||||| | | || || Sbjct 229 GCGGCCGTCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCC 288 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 ||| || || || || || |||||| | || | | |||| ||| || || || Sbjct 289 TTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTC---ACTGGGTTCCACCTC 345 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||| || || | ||||| || |||| |||||| Sbjct 346 CAGGGTGATGGTTTTTCCAGTCAAGGTCTTGACAAAGATCTGCAT 390 >seq24600 Length=2898 Score = 111 bits (122), Expect = 4e-19 Identities = 156/218 (72%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||||||||| || || ||||| || ||||||||||| || | | || | |||||| Sbjct 454 AGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCT 513 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | || ||||| ||||| | ||||||||| || | | || |||||||| || Sbjct 514 TCCAATTGCTTGCCGGCAAAGATCAACCTCTGCTGATCAGGAGGAATGCCTTCCTTGTCC 573 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || ||||| || ||| |||| | | |||| ||| ||| || || || ||||| Sbjct 574 TGGATTTTGGCCTTCACATTCTCAATGGTGTC---ACTTGGCTCCACCTCCAGGGTAATG 630 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || ||||| || | |||||||| |||| |||||| || Sbjct 631 GTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATCTT 668 Score = 89.7 bits (98), Expect = 1e-12 Identities = 147/209 (70%), Gaps = 10/209 (5%) Strand=Plus/Plus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--G 151958 ||| || || ||||| || ||||||||||| || | | || | || ||||| || | Sbjct 1 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCGTCTTCCAGCTG 60 Query 151959 CTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATT 152018 |||| || || ||||| |||||||| ||||| | | || ||||| || || || ||| Sbjct 61 CTTT--CCAGCAAAGATCAGCCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTCCTGGATT 118 Query 152019 TTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTTTG 152075 || || ||| |||| | | |||| ||| ||| || || || ||||| || || Sbjct 119 TTGGCCTTCACATTCTCAATGGTGTC---ACTTGGCTCCACCTCTAGGGTAATGGTCTTC 175 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || | |||||||| |||| |||||| Sbjct 176 CCAGTCAAGGTCTTCACAAAGATCTGCAT 204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1140753519830320