Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21]
883,920 sequences; 1,404,220,341 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq311453 132 1e-25
seq24600 111 4e-19
>seq311453
Length=2514
Score = 132 bits (146), Expect = 1e-25
Identities = 161/218 (74%), Gaps = 6/218 (3%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||||||||| || || || || |||||||||||||| || | | ||| | ||||||
Sbjct 407 AGGACAAGATGGAGGGTGGATTCCTTTTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCT 466
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| | ||||| || ||||| |||||||||||||| | | ||| |||||||| |||
Sbjct 467 TCCAATTGCTTCCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTGTCT 526
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069
|| || || |||||| |||| | | |||| ||| ||| || || || || ||
Sbjct 527 TGGATCTTGGCCTTGACATTCTCGATGGTGTC---ACTGGGCTCCACCTCTAGGGTGATG 583
Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107
||||| || || | |||||||| |||| |||||||||
Sbjct 584 GTTTTCCCGGTCAAGGTCTTCACAAAGATCTGCATTTT 621
Score = 96.9 bits (106), Expect = 8e-15
Identities = 157/225 (70%), Gaps = 6/225 (3%)
Strand=Plus/Plus
Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942
||| || | |||||| || || ||||| ||||| || ||||||||||| || | | ||
Sbjct 169 CCTCAGACGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGT 228
Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002
| || ||||| || ||| || || ||||| |||||||||||||| | | || ||
Sbjct 229 GCGGCCGTCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCC 288
Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059
||| || || || || || |||||| | || | | |||| ||| || || ||
Sbjct 289 TTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTC---ACTGGGTTCCACCTC 345
Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || ||||| || || | ||||| || |||| ||||||
Sbjct 346 CAGGGTGATGGTTTTTCCAGTCAAGGTCTTGACAAAGATCTGCAT 390
>seq24600
Length=2898
Score = 111 bits (122), Expect = 4e-19
Identities = 156/218 (72%), Gaps = 6/218 (3%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||||||||| || || ||||| || ||||||||||| || | | || | ||||||
Sbjct 454 AGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCT 513
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| | || ||||| ||||| | ||||||||| || | | || |||||||| ||
Sbjct 514 TCCAATTGCTTGCCGGCAAAGATCAACCTCTGCTGATCAGGAGGAATGCCTTCCTTGTCC 573
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069
|| ||||| || ||| |||| | | |||| ||| ||| || || || |||||
Sbjct 574 TGGATTTTGGCCTTCACATTCTCAATGGTGTC---ACTTGGCTCCACCTCCAGGGTAATG 630
Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107
|| ||||| || | |||||||| |||| |||||| ||
Sbjct 631 GTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATCTT 668
Score = 89.7 bits (98), Expect = 1e-12
Identities = 147/209 (70%), Gaps = 10/209 (5%)
Strand=Plus/Plus
Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--G 151958
||| || || ||||| || ||||||||||| || | | || | || ||||| || |
Sbjct 1 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCGTCTTCCAGCTG 60
Query 151959 CTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATT 152018
|||| || || ||||| |||||||| ||||| | | || ||||| || || || |||
Sbjct 61 CTTT--CCAGCAAAGATCAGCCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTCCTGGATT 118
Query 152019 TTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTTTG 152075
|| || ||| |||| | | |||| ||| ||| || || || ||||| || ||
Sbjct 119 TTGGCCTTCACATTCTCAATGGTGTC---ACTTGGCTCCACCTCTAGGGTAATGGTCTTC 175
Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || | |||||||| |||| ||||||
Sbjct 176 CCAGTCAAGGTCTTCACAAAGATCTGCAT 204
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1140753519830320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |