Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21]
883,920 sequences; 1,404,220,341 total letters
Query= NC_032111.1
Length=163005
Score E
Sequences producing significant alignments: (Bits) Value
seq236318 116 4e-21
seq15708 89.7 5e-13
>seq236318
Length=20466
Score = 116 bits (128), Expect = 4e-21
Identities = 103/129 (80%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 23533 TCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTA 23592
||||| |||||||||| ||||||||||| || | ||| ||||||| |||||||| ||
Sbjct 6248 TCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCAGGCATTAGACCTCGTTTCTTC 6189
Query 23593 ATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCC 23652
| ||||||||||| ||||| || || |||||||| || || ||||| || ||||| ||
Sbjct 6188 AGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATGCT 6129
Query 23653 ACAAGACGT 23661
|| | ||||
Sbjct 6128 ACTACACGT 6120
Score = 104 bits (114), Expect = 2e-17
Identities = 109/142 (77%), Gaps = 6/142 (4%)
Strand=Plus/Minus
Query 23159 TTTAAAAATCTTCATCTAAAGTGAAT---TTCACTGCTTTATCACTATTCATAACACCCA 23215
|||| |||||| |||| ||||||||| || |||| | ||| ||| |||||||
Sbjct 7754 TTTAGAAATCTGCATCCAAAGTGAATGAGTTATCTGC---AGGACTTGACATCACACCCA 7698
Query 23216 TTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAATGATATAT 23275
| |||||||||| || |||||| |||| || ||||| ||||| || || | || ||||
Sbjct 7697 TCCTTTGATATTCTCCTACACGTTTTTCAAAGAAATTAGTCTTGCCTTCCAGAGAGATAT 7638
Query 23276 TTTCCATAAAATCAAATGGATT 23297
| |||||||| |||||||||||
Sbjct 7637 TCTCCATAAAGTCAAATGGATT 7616
Score = 93.3 bits (102), Expect = 4e-14
Identities = 80/99 (81%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 23763 TTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATT 23822
||||| | ||| | || || |||||||| ||||||||||||||||| |||||||||||
Sbjct 4416 TTCTTTAGAATCCTTAATGTAAGTATCAATAAGTAAACTATACATTTCTGAATGAATATT 4357
Query 23823 TTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTC 23861
|| || |||||||| || ||||| ||||| | |||||
Sbjct 4356 CTCCATGGCAATCTGGAAGCCATAGAAACAGCGTGCTTC 4318
>seq15708
Length=5494
Score = 89.7 bits (98), Expect = 5e-13
Identities = 94/124 (76%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 23531 CTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTT 23590
||||||| || ||||| | ||| || || || || | ||||||||||| |||| || |
Sbjct 5431 CTTCATCTCTGCTAATAAGTTCGTTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCT 5372
Query 23591 TAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGG 23650
| | ||||||||| || ||||| | || |||||||| || || || ||||| ||||| |
Sbjct 5371 TGAGCCAAAATATGGCTGCAAAAGCACCAGAAAAGAAGATGCCTTCGACAGCAGCAAACG 5312
Query 23651 CCAC 23654
| ||
Sbjct 5311 CAAC 5308
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515726079088000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |