Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq236318 116 4e-21 seq15708 89.7 5e-13 >seq236318 Length=20466 Score = 116 bits (128), Expect = 4e-21 Identities = 103/129 (80%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 23533 TCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTA 23592 ||||| |||||||||| ||||||||||| || | ||| ||||||| |||||||| || Sbjct 6248 TCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCAGGCATTAGACCTCGTTTCTTC 6189 Query 23593 ATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCC 23652 | ||||||||||| ||||| || || |||||||| || || ||||| || ||||| || Sbjct 6188 AGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATGCT 6129 Query 23653 ACAAGACGT 23661 || | |||| Sbjct 6128 ACTACACGT 6120 Score = 104 bits (114), Expect = 2e-17 Identities = 109/142 (77%), Gaps = 6/142 (4%) Strand=Plus/Minus Query 23159 TTTAAAAATCTTCATCTAAAGTGAAT---TTCACTGCTTTATCACTATTCATAACACCCA 23215 |||| |||||| |||| ||||||||| || |||| | ||| ||| ||||||| Sbjct 7754 TTTAGAAATCTGCATCCAAAGTGAATGAGTTATCTGC---AGGACTTGACATCACACCCA 7698 Query 23216 TTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAATGATATAT 23275 | |||||||||| || |||||| |||| || ||||| ||||| || || | || |||| Sbjct 7697 TCCTTTGATATTCTCCTACACGTTTTTCAAAGAAATTAGTCTTGCCTTCCAGAGAGATAT 7638 Query 23276 TTTCCATAAAATCAAATGGATT 23297 | |||||||| ||||||||||| Sbjct 7637 TCTCCATAAAGTCAAATGGATT 7616 Score = 93.3 bits (102), Expect = 4e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 23763 TTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATT 23822 ||||| | ||| | || || |||||||| ||||||||||||||||| ||||||||||| Sbjct 4416 TTCTTTAGAATCCTTAATGTAAGTATCAATAAGTAAACTATACATTTCTGAATGAATATT 4357 Query 23823 TTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTC 23861 || || |||||||| || ||||| ||||| | ||||| Sbjct 4356 CTCCATGGCAATCTGGAAGCCATAGAAACAGCGTGCTTC 4318 >seq15708 Length=5494 Score = 89.7 bits (98), Expect = 5e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 23531 CTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTT 23590 ||||||| || ||||| | ||| || || || || | ||||||||||| |||| || | Sbjct 5431 CTTCATCTCTGCTAATAAGTTCGTTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCT 5372 Query 23591 TAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGG 23650 | | ||||||||| || ||||| | || |||||||| || || || ||||| ||||| | Sbjct 5371 TGAGCCAAAATATGGCTGCAAAAGCACCAGAAAAGAAGATGCCTTCGACAGCAGCAAACG 5312 Query 23651 CCAC 23654 | || Sbjct 5311 CAAC 5308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515726079088000