Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21]
883,920 sequences; 1,404,220,341 total letters
Query= NC_033176.1
Length=224064
Score E
Sequences producing significant alignments: (Bits) Value
seq356429 156 6e-33
seq307280 122 1e-22
seq39753 100 4e-16
>seq356429
Length=1100
Score = 156 bits (172), Expect = 6e-33
Identities = 190/259 (73%), Gaps = 0/259 (0%)
Strand=Plus/Plus
Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348
||||||| | | ||||||| || |||||| ||||| || || | ||||
Sbjct 758 GGAACGCCACGTAGGGACACCGTTTCACGTTGAGGCAGACCAGTTTTTGCAAGCTTGCCG 817
Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408
| |||||||| | ||| || || | || || || ||||||||||||||||| | ||||
Sbjct 818 TGTTGACGATTCGGAAGCCGGCGGCGCCCCCAAAAGTGCTGGGCTTCCAGTATTCGGGGG 877
Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468
|||||||| |||| ||| || || || | |||||| |||||||||| ||||| ||||
Sbjct 878 AGCAGATGGGGTTCCCCAGCAGCCCCTTCAAGGAGAAGGGAGCCCCCATCTCGATCATGC 937
Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528
| || || |||||| |||||| || ||| |||||||| | |||| | | | |||||
Sbjct 938 TTTCTCCAAAGATGCTGTTGGGGTAGGTCTTCTCCACCAACAGGCCGGGGAAGAACTCCA 997
Query 8529 CAGCCTCGACGTCTCCGTA 8547
||| |||| |||||||||
Sbjct 998 GAGCGTCGATGTCTCCGTA 1016
>seq307280
Length=12320
Score = 122 bits (134), Expect = 1e-22
Identities = 165/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315
||||| || | | | || ||| ||||||||| |||||| ||| |||| || || |||
Sbjct 10908 GTCTGAAATAATCGTTCATCATCCCATTCTGGGTGTTCTCCTTTAAGAATGTCACAGACC 10967
Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375
| || ||||||| |||||| | ||||| |||||||| | ||| || |||| |||||
Sbjct 10968 CGATTATGTTCCCGGAGCCACAACGTGGCATACATCATCAACCCTGGAACCAACCCAAAG 11027
Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435
|||| || || |||| | || || || || || | ||| ||||||||||| |
Sbjct 11028 ACCTCCTGTCCTACAGAAAATTTCAGGTGGTCAGGGACATGGGGTGGATAGATCATTTCT 11087
Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCTG 9485
||| ||||| || | || ||||||||||| || |||||||||||
Sbjct 11088 GCCTCAGTTTCTTTCACAGTAGGTGGATACATTTCTCCATCAATCATCTG 11137
Score = 107 bits (118), Expect = 3e-18
Identities = 153/213 (72%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 8375 CCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8434
|| || || || || ||||||||||| | || |||||||||||||| ||| ||| |||
Sbjct 7664 CCCCCAAAAGTACTTGGCTTCCAGTATTCAGGTGAGCAGATGACGTTTCCCAGGAGACCT 7723
Query 8435 TTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8494
|| | |||||| |||||||| | || | ||| | ||||| |||| ||| |||||
Sbjct 7724 TTCAAGGAGAAGGGAGCCCCAAGTTCAATCATGGTTTCACCAAAGACGGCTCCAGGACGT 7783
Query 8495 GGCTTTTCCACCAAGAA-TCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGC 8553
||||||| || |||||| | | || | |||| ||| || | ||||| || || |
Sbjct 7784 GGCTTTT-CAACAAGAAGAGCAGGATATAATTCCATAGCATCAATATCTCCATAGAGTTC 7842
Query 8554 CCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT 8586
||||| ||||| || || ||||| |||||
Sbjct 7843 TTGAAGTTCTGCAGCCATTTCTTTTTCACCTGT 7875
Score = 86.0 bits (94), Expect = 9e-12
Identities = 111/152 (73%), Gaps = 1/152 (1%)
Strand=Plus/Plus
Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708
||||||||||||||| || ||||| ||||| | || ||| ||| ||| | ||
Sbjct 12096 TCTTACCCCATGTCCAAGACCTTTTGTGAAACCTGGTCCTTTTTTAGTATCTGTCTTGAA 12155
Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768
||||||| |||||||| ||| |||| |||| ||||| | || ||||| || |||||
Sbjct 12156 GTACTGGTGAGTGAAATGCTGGGCAAAGAAGGTGAACATGACATTTGTGCCTTGAGGATC 12215
Query 9769 GGGAGTGAAGGTCCTCCGAAG-AAGAGTTTTT 9799
||| |||| | |||| || |||| |||||
Sbjct 12216 AGGAATGAATTTTCTCCTTAGCAAGAATTTTT 12247
>seq39753
Length=874
Score = 100 bits (110), Expect = 4e-16
Identities = 105/138 (76%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 9069 ATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACGATTTTG 9128
||||||||| || | ||||||||| || | | ||||||||| | || || || ||
Sbjct 346 ATCCGGCATTAGGGCATGCCAGTGGTAGAGCTGGTTAAACTCCAGAGCAATGCGGTTCTG 405
Query 9129 GTACTGGAACGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAAATGGTAGCC 9188
|||||||||| | |||||||| || ||||| | ||||| ||||| | ||||||||
Sbjct 406 GTACTGGAACTGGGCCCCAAAGAGGAGCTCGGGTTCAAACATCAGCTTCAGGTGGTAGCC 465
Query 9189 GCTGAGCTGCTGAACGTA 9206
|||||| ||||| |||||
Sbjct 466 GCTGAGATGCTGGACGTA 483
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 708956028236800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |