Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq356429 156 6e-33 seq307280 122 1e-22 seq39753 100 4e-16 >seq356429 Length=1100 Score = 156 bits (172), Expect = 6e-33 Identities = 190/259 (73%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 ||||||| | | ||||||| || |||||| ||||| || || | |||| Sbjct 758 GGAACGCCACGTAGGGACACCGTTTCACGTTGAGGCAGACCAGTTTTTGCAAGCTTGCCG 817 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 | |||||||| | ||| || || | || || || ||||||||||||||||| | |||| Sbjct 818 TGTTGACGATTCGGAAGCCGGCGGCGCCCCCAAAAGTGCTGGGCTTCCAGTATTCGGGGG 877 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 |||||||| |||| ||| || || || | |||||| |||||||||| ||||| |||| Sbjct 878 AGCAGATGGGGTTCCCCAGCAGCCCCTTCAAGGAGAAGGGAGCCCCCATCTCGATCATGC 937 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 | || || |||||| |||||| || ||| |||||||| | |||| | | | ||||| Sbjct 938 TTTCTCCAAAGATGCTGTTGGGGTAGGTCTTCTCCACCAACAGGCCGGGGAAGAACTCCA 997 Query 8529 CAGCCTCGACGTCTCCGTA 8547 ||| |||| ||||||||| Sbjct 998 GAGCGTCGATGTCTCCGTA 1016 >seq307280 Length=12320 Score = 122 bits (134), Expect = 1e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 ||||| || | | | || ||| ||||||||| |||||| ||| |||| || || ||| Sbjct 10908 GTCTGAAATAATCGTTCATCATCCCATTCTGGGTGTTCTCCTTTAAGAATGTCACAGACC 10967 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 | || ||||||| |||||| | ||||| |||||||| | ||| || |||| ||||| Sbjct 10968 CGATTATGTTCCCGGAGCCACAACGTGGCATACATCATCAACCCTGGAACCAACCCAAAG 11027 Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435 |||| || || |||| | || || || || || | ||| ||||||||||| | Sbjct 11028 ACCTCCTGTCCTACAGAAAATTTCAGGTGGTCAGGGACATGGGGTGGATAGATCATTTCT 11087 Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCTG 9485 ||| ||||| || | || ||||||||||| || ||||||||||| Sbjct 11088 GCCTCAGTTTCTTTCACAGTAGGTGGATACATTTCTCCATCAATCATCTG 11137 Score = 107 bits (118), Expect = 3e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 8375 CCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8434 || || || || || ||||||||||| | || |||||||||||||| ||| ||| ||| Sbjct 7664 CCCCCAAAAGTACTTGGCTTCCAGTATTCAGGTGAGCAGATGACGTTTCCCAGGAGACCT 7723 Query 8435 TTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8494 || | |||||| |||||||| | || | ||| | ||||| |||| ||| ||||| Sbjct 7724 TTCAAGGAGAAGGGAGCCCCAAGTTCAATCATGGTTTCACCAAAGACGGCTCCAGGACGT 7783 Query 8495 GGCTTTTCCACCAAGAA-TCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGC 8553 ||||||| || |||||| | | || | |||| ||| || | ||||| || || | Sbjct 7784 GGCTTTT-CAACAAGAAGAGCAGGATATAATTCCATAGCATCAATATCTCCATAGAGTTC 7842 Query 8554 CCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT 8586 ||||| ||||| || || ||||| ||||| Sbjct 7843 TTGAAGTTCTGCAGCCATTTCTTTTTCACCTGT 7875 Score = 86.0 bits (94), Expect = 9e-12 Identities = 111/152 (73%), Gaps = 1/152 (1%) Strand=Plus/Plus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 ||||||||||||||| || ||||| ||||| | || ||| ||| ||| | || Sbjct 12096 TCTTACCCCATGTCCAAGACCTTTTGTGAAACCTGGTCCTTTTTTAGTATCTGTCTTGAA 12155 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 ||||||| |||||||| ||| |||| |||| ||||| | || ||||| || ||||| Sbjct 12156 GTACTGGTGAGTGAAATGCTGGGCAAAGAAGGTGAACATGACATTTGTGCCTTGAGGATC 12215 Query 9769 GGGAGTGAAGGTCCTCCGAAG-AAGAGTTTTT 9799 ||| |||| | |||| || |||| ||||| Sbjct 12216 AGGAATGAATTTTCTCCTTAGCAAGAATTTTT 12247 >seq39753 Length=874 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 9069 ATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACGATTTTG 9128 ||||||||| || | ||||||||| || | | ||||||||| | || || || || Sbjct 346 ATCCGGCATTAGGGCATGCCAGTGGTAGAGCTGGTTAAACTCCAGAGCAATGCGGTTCTG 405 Query 9129 GTACTGGAACGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAAATGGTAGCC 9188 |||||||||| | |||||||| || ||||| | ||||| ||||| | |||||||| Sbjct 406 GTACTGGAACTGGGCCCCAAAGAGGAGCTCGGGTTCAAACATCAGCTTCAGGTGGTAGCC 465 Query 9189 GCTGAGCTGCTGAACGTA 9206 |||||| ||||| ||||| Sbjct 466 GCTGAGATGCTGGACGTA 483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708956028236800