Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21]
883,920 sequences; 1,404,220,341 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq311453 145 2e-29
seq24600 109 1e-18
seq433667 98.7 2e-15
>seq311453
Length=2514
Score = 145 bits (160), Expect = 2e-29
Identities = 164/217 (76%), Gaps = 7/217 (3%)
Strand=Plus/Minus
Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974
||||||| | || || ||||| || | || || ||||| |||||||| ||||||||
Sbjct 621 AAAATGC---AGATCTTTGTGAAGACCTTGACCGGGAAAACCATCACCCTAGAGGTGGA- 566
Query 177975 AGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032
|| ||| ||||||||||||| ||||| ||||| || ||||| ||||| |||||||
Sbjct 565 -GCCCAGTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTC 507
Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCG 178092
| |||||||| | || ||||| || || || || | |||||||| | ||||| | |
Sbjct 506 CCGACCAGCAGAGGCTGATCTTTGCTGGGAAGCAATTGGAAGATGGCCGCACTCTCTCAG 447
Query 178093 ATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129
| || ||| ||||||| ||||| || || ||||||||
Sbjct 446 ACTACAACATCCAAAAGGAATCCACCCTCCATCTTGT 410
Score = 129 bits (142), Expect = 1e-24
Identities = 152/206 (74%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || || || || | || |||||||| |||||||| ||||||||| | |||
Sbjct 387 CAGATCTTTGTCAAGACCTTGACTGGAAAAACCATCACCCTGGAGGTGGAACCCAGTGAC 328
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || || ||||| ||||| |||||||||||||| || ||||| ||||||||
Sbjct 327 ACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCCGACCAGCAG 268
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
| || ||||| || || |||||||| ||||| || | || || | || || ||| ||
Sbjct 267 AGGCTGATCTTTGCTGGCAAACAGCTGGAAGACGGCCGCACCCTCTCTGACTACAACATC 208
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || || || ||
Sbjct 207 CAGAAGGAGTCCACTCTCCACCTGGT 182
>seq24600
Length=2898
Score = 109 bits (120), Expect = 1e-18
Identities = 147/203 (72%), Gaps = 4/203 (2%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || || ||||| || | || || || || || ||||| |||||||| || ||
Sbjct 201 CAGATCTTTGTGAAGACCTTGACTGGGAAGACCATTACCCTAGAGGTGGA--GCCAAGTG 144
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||| ||||| || || || || |||||||||||||| || ||||| ||||| |
Sbjct 143 ACACCATTGAGAATGTGAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCTGACCAAC 84
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | || ||||| || ||||| ||||| ||||| || | || ||| | || || |||
Sbjct 83 AGAGGCTGATCTTTGCTGGAAAGCAGCTGGAAGACGGCCGCACCCTTTCTGACTACAACA 24
Query 178102 TCCAAAAAGAATCAACACTGCAT 178124
|||| || || || || || |||
Sbjct 23 TCCAGAAGGAGTCCACCCTCCAT 1
>seq433667
Length=2244
Score = 98.7 bits (108), Expect = 2e-15
Identities = 110/147 (75%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 177983 CACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042
|||||||||||| ||||| ||||| |||||||| ||||| || ||||| || |||||
Sbjct 1 CACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGATCAGCA 60
Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGT 178102
| || ||||| || || |||||||| |||||||| | || || | || || ||| |
Sbjct 61 GAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGTACCCTCTCTGACTACAACAT 120
Query 178103 CCAAAAAGAATCAACACTGCATCTTGT 178129
||| || || || || || || || ||
Sbjct 121 CCAGAAGGAGTCCACCCTCCACCTGGT 147
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1190098673320480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |