Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq311453 145 2e-29 seq24600 109 1e-18 seq433667 98.7 2e-15 >seq311453 Length=2514 Score = 145 bits (160), Expect = 2e-29 Identities = 164/217 (76%), Gaps = 7/217 (3%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || || ||||| || | || || ||||| |||||||| |||||||| Sbjct 621 AAAATGC---AGATCTTTGTGAAGACCTTGACCGGGAAAACCATCACCCTAGAGGTGGA- 566 Query 177975 AGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032 || ||| ||||||||||||| ||||| ||||| || ||||| ||||| ||||||| Sbjct 565 -GCCCAGTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTC 507 Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCG 178092 | |||||||| | || ||||| || || || || | |||||||| | ||||| | | Sbjct 506 CCGACCAGCAGAGGCTGATCTTTGCTGGGAAGCAATTGGAAGATGGCCGCACTCTCTCAG 447 Query 178093 ATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | || ||| ||||||| ||||| || || |||||||| Sbjct 446 ACTACAACATCCAAAAGGAATCCACCCTCCATCTTGT 410 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || | || |||||||| |||||||| ||||||||| | ||| Sbjct 387 CAGATCTTTGTCAAGACCTTGACTGGAAAAACCATCACCCTGGAGGTGGAACCCAGTGAC 328 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| ||||| |||||||||||||| || ||||| |||||||| Sbjct 327 ACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCCGACCAGCAG 268 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || ||||| || || |||||||| ||||| || | || || | || || ||| || Sbjct 267 AGGCTGATCTTTGCTGGCAAACAGCTGGAAGACGGCCGCACCCTCTCTGACTACAACATC 208 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 207 CAGAAGGAGTCCACTCTCCACCTGGT 182 >seq24600 Length=2898 Score = 109 bits (120), Expect = 1e-18 Identities = 147/203 (72%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || | || || || || || ||||| |||||||| || || Sbjct 201 CAGATCTTTGTGAAGACCTTGACTGGGAAGACCATTACCCTAGAGGTGGA--GCCAAGTG 144 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| || || || || |||||||||||||| || ||||| ||||| | Sbjct 143 ACACCATTGAGAATGTGAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCTGACCAAC 84 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || ||||| ||||| ||||| || | || ||| | || || ||| Sbjct 83 AGAGGCTGATCTTTGCTGGAAAGCAGCTGGAAGACGGCCGCACCCTTTCTGACTACAACA 24 Query 178102 TCCAAAAAGAATCAACACTGCAT 178124 |||| || || || || || ||| Sbjct 23 TCCAGAAGGAGTCCACCCTCCAT 1 >seq433667 Length=2244 Score = 98.7 bits (108), Expect = 2e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 177983 CACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 |||||||||||| ||||| ||||| |||||||| ||||| || ||||| || ||||| Sbjct 1 CACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGATCAGCA 60 Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGT 178102 | || ||||| || || |||||||| |||||||| | || || | || || ||| | Sbjct 61 GAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGTACCCTCTCTGACTACAACAT 120 Query 178103 CCAAAAAGAATCAACACTGCATCTTGT 178129 ||| || || || || || || || || Sbjct 121 CCAGAAGGAGTCCACCCTCCACCTGGT 147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1190098673320480