Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21]
883,920 sequences; 1,404,220,341 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq24600 123 2e-23
seq311453 120 3e-22
seq875126 82.4 7e-11
>seq24600
Length=2898
Score = 123 bits (136), Expect = 2e-23
Identities = 160/221 (72%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
||||| | || ||||| || ||| ||||||||| ||||| ||||| |||||||||||
Sbjct 448 AGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGG 507
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || | ||||||||||| || |||| | ||| || || | |||| || |||
Sbjct 508 CCATCTTCCAATTGCTTGCCGGCAAAGATCAACCTCTGCTGATCAGGAGGAATGCCTTCC 567
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824
|||||| |||||| ||||| | | ||||| || | ||||||||||| ||
Sbjct 568 TTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCACTTGGCTCCACCTCCAGGGTA 627
Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
|| || || || |||| ||||| || || |||||||| ||
Sbjct 628 ATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATCTT 668
>seq311453
Length=2514
Score = 120 bits (132), Expect = 3e-22
Identities = 158/219 (72%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
||||| | ||||| || || ||| ||||||||| ||||| ||||| |||||||||||
Sbjct 173 AGACGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGG 232
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
|||| || ||||| ||||| || || ||||| | ||| ||||| | |||| || ||
Sbjct 233 CCGTCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCT 292
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824
|||||| ||| || ||| | | ||||| || | |||||||||| ||
Sbjct 293 TTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGTTCCACCTCCAGGGTG 352
Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|| ||||| || |||| ||||| || || |||||||||
Sbjct 353 ATGGTTTTTCCAGTCAAGGTCTTGACAAAGATCTGCATG 391
>seq875126
Length=1326
Score = 82.4 bits (90), Expect = 7e-11
Identities = 74/93 (80%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713
|| ||||| || ||| |||||||||||| || ||||| |||||||| || | || ||
Sbjct 1234 ACAAGATGGAGAGTGGACTCCTTCTGAATATTGTAGTCAGAGAGGGTACGGCCATCTTCC 1293
Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGG 41746
| |||||||||||| || ||||| | |||||||
Sbjct 1294 AACTGCTTGCCGGCAAAAATCAGCCTCTGTTGG 1326
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 457196003104000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |