Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq3478 141 7e-29 seq4337 100 2e-16 seq19887 96.9 3e-15 >seq3478 Length=14355437 Score = 141 bits (156), Expect = 7e-29 Identities = 181/250 (72%), Gaps = 16/250 (6%) Strand=Plus/Plus Query 3982 TCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACATTAGAAAGAACACTT 4041 ||||| ||||| ||||||||| || | |||||||| || | || || | | || | | Sbjct 10219957 TCATACACTTCGTATTTGTACTGGATGCCATTCTCTTCCTGGATATCAGCAGGGACTCCT 10220016 Query 4042 GGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACAT 4101 || | |||| | | ||||||||||||||| ||||| |||||||||||| || |||| | Sbjct 10220017 GGGTTTTCTGGGAGACGTTTGTATTTCTCTAAATCAATTTCTGGAAAAAATGTATCACTT 10220076 Query 4102 TCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACT------- 4154 ||||| || |||| || || |||||||||| ||||| ||| |||| Sbjct 10220077 TCAAACTCATGCAAAATTCTTGTCACAAACA-------ATCGC-TGGTGAACTGGTTTCG 10220128 Query 4155 -CATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTG 4213 ||| ||| | ||||| || ||||| |||||||| ||||| || | ||||| ||| || Sbjct 10220129 CCATTGCTGCCTTATAAACGGAACTGCCTCCAATGATCCAAACTACGTCTATCTTACTTT 10220188 Query 4214 CTAATTCTGG 4223 ||| ||||| Sbjct 10220189 TTAACTCTGG 10220198 >seq4337 Length=10356891 Score = 100 bits (110), Expect = 2e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| || || | || || || | ||||||||| |||||||||| || ||||||||||| Sbjct 7180877 CTTGAGCTCTCTACTAAGCACTATATTAATTCTATCTTTTAAAGGGCGATTCTTCTCAGG 7180936 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCTG 4399 ||| |||||||||||| | ||||||| |||| | |||||||||| ||| Sbjct 7180937 AATCGAGAACCAAGTCCTCCTACCCATTATCAACACATTCTGTTTACCTG 7180986 Score = 89.7 bits (98), Expect = 4e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 ||||||||||||||||| ||||| |||||||||||| || |||| |||||| || |||| Sbjct 7137062 AAGTTTGTATTTCTCTAAATCAATTTCTGGAAAAAATGTATCACTTTCAAACTCATGCAA 7137121 Query 4116 GATCCTAGTCACAAACA 4132 || || |||||||||| Sbjct 7137122 AATTCTTGTCACAAACA 7137138 >seq19887 Length=6038298 Score = 96.9 bits (106), Expect = 3e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||| ||||| || || || || |||||||| || ||||| || ||||| | ||| |||| Sbjct 4360262 CTTTGTATTCAGCCCCAAAGTGTCTCCACTGGAAACCATATACTGGTCCCAAATCCCCTT 4360321 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | ||||| | | ||||| ||||||| || || | |||||||| |||||||||| Sbjct 4360322 CCTCTCTCTTACTGAAACCTTGTTTATCCAAGAAGTCACGTGATCCATTGGCATCCCAAA 4360381 Query 102153 TGTGCACGCCAGCTGCTGATAGCTCTTT 102180 | | ||| || ||| || |||||||| Sbjct 4360382 TCTTCACTCCTTTTGCAGAGAGCTCTTT 4360409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361163567683904