Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq3620 114 2e-20 seq3895 111 2e-19 seq4256 82.4 9e-11 >seq3620 Length=164711 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| || || |||||||| || || |||||| ||| | || ||||| |||||||| | Sbjct 102991 TCCACCCATAGAAATGCATGCTGGTGAGTTTGCCATAGTTGGGCTCTGCAATATGGATGT 103050 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 ||| || || || ||||||||||| || || ||||| || |||||||| | ||| |||| Sbjct 103051 TCAAGGACTGGCTCTGATCGATGAAAGCGCCTCTGTCAGCTGCCATTTTGAGGATGGTCT 103110 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 53045 | || | |||||||| | || ||||| | |||| | || ||||||| Sbjct 103111 TCTGGGAGATTTCCCAGACTGTCTTATAGAGCTGCTTCAAGTCATCTGGAA 103161 Score = 93.3 bits (102), Expect = 5e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| || | ||| || ||||||||||| | || || || || || || |||||||| | Sbjct 118414 CACTGAACACTTTCTTGGTTTCTTTGTGCAAGTTGGAGACCGCAATCCTTGCGGCTAGGA 118473 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 ||||||| || || |||| ||||| || || ||| | || || | ||| || |||| Sbjct 118474 TGGCATAGTCGGGGTGTTTGGTAGTGAGGGTTGCAGCTGTCTCAGCAGCCAGTGTATCCA 118533 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 || || || || || ||| | |||| || ||||| |||||||| Sbjct 118534 GCTCCACTGTGGTGACACCACTGTATAGACCCTGGATTACCTTCAT 118579 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 54029 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 54088 || |||||||| ||||||||||||||||| || || | || || || |||| || || Sbjct 110958 ACCCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAACAGGTCCCTGGCTCGCTGC 111017 Query 54089 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 54148 ||||| || || || ||||| || || || || ||| | | || || |||||||||| Sbjct 111018 TCCTCCTTCCCAGTGTTCTTCTTCAGGTCAAGAAACTCAAAGATGTCCAAATGCCACGGC 111077 Query 54149 TCCAAGTATATGG 54161 |||| ||| |||| Sbjct 111078 TCCAGGTAGATGG 111090 Score = 82.4 bits (90), Expect = 9e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 53384 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 53443 ||| | || || || ||||| || | || | || ||||| || || | || || ||| Sbjct 106130 CCTTCGTAAGTTTCATATGGCCCATACTCTTTCGCAAGTTCGCAGCTGGATTCCAAAGCA 106189 Query 53444 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAAT 53503 |||||||||||||| || || |||| || || || || || || |||| ||||| Sbjct 106190 CCGTAATAAATGGTCTCAAAAATCTGCTGGTTCAGCAACTGGGCCTCGGGGCTTTCAAAG 106249 Query 53504 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTA 53563 || || | | || || ||||| ||||| | ||||| || ||||| || || || | | Sbjct 106250 GGGTATCTCATCAGGATGAACGCATCTGCCAGACCTTGCACCCCAATGCCAATGGGGCGA 106309 Query 53564 TGTCTCTTATTAGAGATTTCAGC 53586 || | || || ||||| || || Sbjct 106310 TGGCGTTTGTTGGAGATCTCGGC 106332 >seq3895 Length=4157194 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| |||| |||||| | ||| ||||| || || ||||| ||||| || || | ||| | Sbjct 2197311 CCTCATCTCGACTAATGAGTTCATTGGAGAATGTCAGTCCAGGCATAAGACCCCTCTTCT 2197252 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||||||||| | ||||| || || || ||||| |||||||| ||||| ||||||| Sbjct 2197251 TCAGCCAAAATATAGCAGCAAAAGAACCTGAGAAGAAGATTCCTTCCACTGCAGCAAAGG 2197192 Query 24277 CAATAAGTCTTTCTCC 24292 ||| | ||| || || Sbjct 2197191 CAACCACTCTCTCCCC 2197176 Score = 82.4 bits (90), Expect = 9e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 24632 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 24691 ||| ||||| |||||||| ||||| || | ||||||||||||||| ||||| | || | Sbjct 2185978 CACCTCTTCTACTGTCCAGAATGAAGCTTGTGCCTTTTTATACATTTTCCACAAATCCGG 2185919 Query 24692 ATATTGAATTGGAAAAATAACAAATCTATTTGGATTTTTT 24731 ||||| | ||| || || ||||||| | ||||||||| Sbjct 2185918 GTATTGCAGTGGGAAGATGACAAATCGACGAGGATTTTTT 2185879 >seq4256 Length=2845976 Score = 82.4 bits (90), Expect = 9e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454 |||||||| || || || || | ||||| |||||||| ||||| || ||||| || || Sbjct 150533 ATCTTTAATGTAAGTGTCTATGAGCAGACTGTACATTTCTGAATGTATATTTTCCATAGC 150592 Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTC 24514 || || || || |||||| | | ||| || || |||||||||||| | |||||||| Sbjct 150593 AATCTGGAAGCCATAGAAAAAGCGAGCTTCAGTTATCTGTACTTCTTGGCTGAATCGTTC 150652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593573882065920