Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq2505 141 1e-28 seq420 131 2e-25 >seq2505 Length=1702948 Score = 141 bits (156), Expect = 1e-28 Identities = 182/251 (73%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 83143 GAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTG 83202 |||||||||||||||||||| | ||| || |||||||| ||||||||| ||| ||| Sbjct 1602528 GAACTTCTCGAAGTTCCAGGAGATGTCATTCCGGCACACAGGAGACCAGATGATGTACTG 1602587 Query 83203 GGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAA 83262 || | | ||| |||| | ||| ||| || |||||||||||| ||||| Sbjct 1602588 TGGATTGGTCATCAGCGCCATTGGGTCATCGTGTGGGAAAGGCAGGGCCTCTTTCAGGAA 1602647 Query 83263 GGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTT 83322 | ||||||||| || || |||| || || || || ||||||||||| | | ||||| Sbjct 1602648 AGTGAAGAGCGGGTGAGCATTTGCCCCATTCACATCACACTTCTCGAACACGGTGAAGTT 1602707 Query 83323 CGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTG 83382 || || | || || || || ||||||||||||| |||| ||| |||||| |||| Sbjct 1602708 AGGTTCATACCCTTTGCCGGGGCGGACGTGCTTCAAGGAAAGCAGGATCTCCTCATTGGT 1602767 Query 83383 GGCGTTTTCCT 83393 ||| || |||| Sbjct 1602768 GGCATTCTCCT 1602778 >seq420 Length=1163068 Score = 131 bits (144), Expect = 2e-25 Identities = 210/292 (72%), Gaps = 16/292 (5%) Strand=Plus/Minus Query 83068 GATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC---ACGGGCGT 83124 |||||||||||| | ||| ||||||| ||||| ||||||| |||| | |||| Sbjct 92244 GATGTCGGGCTCGATGGCGCTGGTCTGGAAGCGGGGGCTGTA---GCGCTTGAAGGGCTC 92188 Query 83125 GCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGG 83184 || || | ||||||| |||||||||||||||||||| | ||||| ||||| ||| || Sbjct 92187 CCCCTCGGGCCCCACCAGGAACTTCTCGAAGTTCCAGGAGAGGTCGTCGCGGCGCACCGG 92128 Query 83185 AGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATG-TCGTCGCTAGGCGCCG 83243 ||| | | || || ||||||| || ||| | | || | |||||| || || | Sbjct 92127 GCTCCACACGAGGAACTTGGGGTCGGCCATGAGGGCG-GCAGGCTCGTCGGCCGGGGCGG 92069 Query 83244 GCA---GGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGC-CCTTGCACCGTTGACCTCG 83299 ||| |||||| || ||| ||||||||| || || | | ||| ||||| |||| | Sbjct 92068 GCAGGTGGGCCT-TC--AGGTAGGCGAAGACGGGGTGCACGTCCTGC-CCGTTCACCTGG 92013 Query 83300 CACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGT 83351 ||||||| | ||| | ||||| |||||||||||| || || || |||| Sbjct 92012 CACTTCTGCAGCAGCGTGAAGTTGGGCTCGAAGCCGCCGCCCGGCCGCACGT 91961 Score = 120 bits (132), Expect = 4e-22 Identities = 119/152 (78%), Gaps = 3/152 (2%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||||| || |||||||| |||||||| || ||||| ||||||| || | ||| Sbjct 90726 CCTGGTAGCCAAACTGGTTGCACGGGAAGCCCAGCACGACCAGCCGGCGGGGG--TAGCG 90669 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 | | |||||||| ||| | ||| ||||| ||||| ||||| | |||||||| ||||| | Sbjct 90668 GGC-CTGCAGCTGGTTGAGCTGGGTGTAGTCCCGCACCGTCGTGCCTCAGAGAGACGCCA 90610 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAG 83542 |||||||||| |||| ||||||||||| ||| Sbjct 90609 CGTTCTCGATCAGCACCACCCGGCCCCGGAAG 90578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608645331356160