Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq19881 134 1e-26 seq10545 131 1e-25 seq7604 109 5e-19 seq8631 100 2e-16 >seq19881 Length=10700766 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | ||||| | ||| | ||||||||||| || ||||| ||||| | | Sbjct 10194029 CCACCTCTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 10194088 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | || |||||||| ||||| ||| | || || ||||||||||| ||| Sbjct 10194089 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 10194148 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||| ||||| |||||| |||||| | | | || |||| ||||||| Sbjct 10194149 ATGCCTTCTTTGTCCTGGATCTTGGCTTTCACATTCTCAATGGTGTCACTGGGCTCCACC 10194208 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| ||||||||||| || | || || ||||| || ||||| Sbjct 10194209 TCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 10194255 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | ||||| | ||| | ||||||||||| || ||||| ||||| | | Sbjct 10194257 CCACCTCTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 10194316 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | || |||||||| ||||| ||| | || || ||||||||||| ||| Sbjct 10194317 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 10194376 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||| ||||| |||||| |||||| | | | || |||| ||||||| Sbjct 10194377 ATGCCTTCTTTGTCCTGGATCTTGGCTTTCACATTCTCAATGGTGTCACTGGGCTCCACC 10194436 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| ||||||||||| || | || || ||||| || ||||| Sbjct 10194437 TCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 10194483 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | ||||| | ||| | ||||||||||| || ||||| ||||| | | Sbjct 10194485 CCACCTCTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 10194544 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | || |||||||| ||||| ||| | || || ||||||||||| ||| Sbjct 10194545 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 10194604 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||| ||||| |||||| |||||| | | | || |||| ||||||| Sbjct 10194605 ATGCCTTCTTTGTCCTGGATCTTGGCTTTCACATTCTCAATGGTGTCACTGGGCTCCACC 10194664 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| ||||||||||| || | || || ||||| || ||||| Sbjct 10194665 TCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 10194711 Score = 132 bits (146), Expect = 4e-26 Identities = 169/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | ||||| | ||| | ||||||||||| || ||||| ||||| | | Sbjct 10193460 CCACCTCTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 10193519 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | || |||||||| ||||| ||| | || || ||||||||||| ||| Sbjct 10193520 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 10193579 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||| ||||| |||||| |||||| | | | || |||| ||| || Sbjct 10193580 ATGCCTTCTTTGTCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTCACTGGGTTCAACC 10193639 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAA 21181 |||| ||| ||||||||||| || | || || ||||| || ||||| |||| Sbjct 10193640 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGGTGAA 10193692 Score = 132 bits (146), Expect = 4e-26 Identities = 169/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | ||||| | ||| | ||||||||||| || ||||| ||||| | | Sbjct 10194713 CCACCTCTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 10194772 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | || |||||||| ||||| ||| | || || ||||||||||| ||| Sbjct 10194773 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 10194832 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||| ||||| |||||| |||||| | | | || |||| ||| || Sbjct 10194833 ATGCCTTCTTTGTCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTCACTGGGTTCAACC 10194892 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAA 21181 |||| ||| ||||||||||| || | || || ||||| || ||||| |||| Sbjct 10194893 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGGTGAA 10194945 >seq10545 Length=227 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | ||||| | ||| | ||||||||||| || ||||| ||||| | | Sbjct 227 CCACCTCTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 168 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | || |||||||| ||||| ||| | || || ||||||||||| ||| Sbjct 167 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 108 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||| ||||| |||||| |||||| | | | || |||| ||| || Sbjct 107 ATGCCTTCTTTGTCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTCACTGGGTTCAACC 48 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| ||||||||||| || | || || ||||| || ||||| Sbjct 47 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1 >seq7604 Length=1415154 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| |||||| || || || ||||| ||||| | |||||| | |||| Sbjct 1125793 AGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCT 1125852 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| || || ||| | || | |||||||| || || | |||||| ||||| Sbjct 1125853 TCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCC 1125912 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||| || || || | | | || |||| |||||| ||| | ||| |||||| Sbjct 1125913 TGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATGGTC 1125972 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 ||||| || || ||||| ||||| || |||||||| Sbjct 1125973 TTGCCTGTCAAGGTTTTCACAAAGATCTGCATTTT 1126007 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 20945 GTTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTC 21004 ||| || || || || | || |||| |||| |||||| || || || ||||| ||||| Sbjct 1124406 GTTACCACCCCGGAGGCGTAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTC 1124465 Query 21005 CGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCAC 21064 | |||||| | |||| |||||||| || || ||| | || | |||||||| || Sbjct 1124466 TGACAGGGTGCGCCCGTCTTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGG 1124525 Query 21065 GGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC 21124 || | |||||| ||||| ||| || || || | | | || |||| |||||| Sbjct 1124526 AGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTC 1124585 Query 21125 CGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| | ||| ||||||||||| || || ||||| ||||| || ||||| Sbjct 1124586 TACTTCTAGGGTGATGGTCTTGCCTGTCAAGGTTTTCACAAAGATCTGCAT 1124636 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| |||||| || || || ||||| ||||| | |||||| | |||| Sbjct 1124653 AGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCT 1124712 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| || || ||| | || | |||||||| || || | |||||| ||||| Sbjct 1124713 TCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCC 1124772 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||| || || || | | | || |||| |||||| ||| | ||| |||||| Sbjct 1124773 TGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATGGTC 1124832 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || || ||||| ||||| || ||||| Sbjct 1124833 TTGCCTGTCAAGGTTTTCACAAAGATCTGCAT 1124864 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| |||||| || || || ||||| ||||| | |||||| | |||| Sbjct 1124881 AGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCT 1124940 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| || || ||| | || | |||||||| || || | |||||| ||||| Sbjct 1124941 TCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCC 1125000 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||| || || || | | | || |||| |||||| ||| | ||| |||||| Sbjct 1125001 TGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATGGTC 1125060 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || || ||||| ||||| || ||||| Sbjct 1125061 TTGCCTGTCAAGGTTTTCACAAAGATCTGCAT 1125092 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| |||||| || || || ||||| ||||| | |||||| | |||| Sbjct 1125109 AGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCT 1125168 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| || || ||| | || | |||||||| || || | |||||| ||||| Sbjct 1125169 TCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCC 1125228 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||| || || || | | | || |||| |||||| ||| | ||| |||||| Sbjct 1125229 TGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATGGTC 1125288 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || || ||||| ||||| || ||||| Sbjct 1125289 TTGCCTGTCAAGGTTTTCACAAAGATCTGCAT 1125320 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| |||||| || || || ||||| ||||| | |||||| | |||| Sbjct 1125337 AGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCT 1125396 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| || || ||| | || | |||||||| || || | |||||| ||||| Sbjct 1125397 TCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCC 1125456 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||| || || || | | | || |||| |||||| ||| | ||| |||||| Sbjct 1125457 TGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATGGTC 1125516 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || || ||||| ||||| || ||||| Sbjct 1125517 TTGCCTGTCAAGGTTTTCACAAAGATCTGCAT 1125548 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| |||||| || || || ||||| ||||| | |||||| | |||| Sbjct 1125565 AGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCT 1125624 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| || || ||| | || | |||||||| || || | |||||| ||||| Sbjct 1125625 TCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCC 1125684 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||| || || || | | | || |||| |||||| ||| | ||| |||||| Sbjct 1125685 TGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATGGTC 1125744 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || || ||||| ||||| || ||||| Sbjct 1125745 TTGCCTGTCAAGGTTTTCACAAAGATCTGCAT 1125776 >seq8631 Length=204 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 20973 TGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGT 21032 |||| |||||| || || || ||||| ||||| | |||||| | |||| |||||||| Sbjct 203 TGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCTTCCAGCTGC 144 Query 21033 TTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTT 21092 || || ||| | || | |||||||| || || | |||||| ||||| ||| || Sbjct 143 TTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGGATTTTG 84 Query 21093 TGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTT 21152 || || | | | || |||| |||||| ||| | ||| ||||||||||| || Sbjct 83 GCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATGGTCTTGCCTGTC 24 Query 21153 AACGTTTTGACAAATATTTGCAT 21175 || ||||| ||||| || ||||| Sbjct 23 AAGGTTTTCACAAAGATCTGCAT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422156768363264