Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq19887 111 1e-19 >seq19887 Length=6038298 Score = 111 bits (122), Expect = 1e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 97117 GTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCT 97176 ||||||||||| |||||| | || | || ||||| || || || || |||||||||||| Sbjct 4354214 GTGACATGGGCAATCATATATGTGAGCAGTGAATAACTGGCGATATTGAAAGGCACCCCT 4354273 Query 97177 AGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAA 97236 |||||||| || | ||||| ||||| ||||| || || || | |||| |||||| Sbjct 4354274 AGTCCCATGTCTCCAGATCTCTGATACAACTGGCATGACAGTTCACCATTTAGAACATAA 4354333 Query 97237 AACTGACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAG 97287 ||||| | | | || || || ||||| |||||| || || ||||||| Sbjct 4354334 AACTGGCAAAGGGCGTGGCATGGAGGCAAAGCCATTAGTGAAATATCTAAG 4354384 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 97402 TATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCT 97461 ||||| || ||||| || ||||| ||||| ||||| || ||||| | || ||||| ||| Sbjct 4360267 TATTCAGCCCCAAAGTGTCTCCACTGGAAACCATATACTGGTCCCAAATCCCCTTCCTCT 4360326 Query 97462 CTATCACAGAAACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGC 97521 || | || |||||| | ||||| || || | |||||||| ||||||||||| | | Sbjct 4360327 CTCTTACTGAAACCTTGTTTATCCAAGAAGTCACGTGATCCATTGGCATCCCAAATCTTC 4360386 Query 97522 ACACCAGATGCTGCAAGCTCTTT 97544 || || ||| | |||||||| Sbjct 4360387 ACTCCTTTTGCAGAGAGCTCTTT 4360409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346699877137280