Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq7604 96.9 4e-15 seq2606 95.1 1e-14 seq1471 91.5 2e-13 >seq7604 Length=1415154 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1151337 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 1151396 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 1151397 TACTAACGAGGAT 1151409 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 || ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||| Sbjct 1164202 TTATCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACC 1164261 Query 60122 ACTATACTACCGAGGA 60137 ||||||||| |||||| Sbjct 1164262 ACTATACTAACGAGGA 1164277 >seq2606 Length=4432526 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1370115 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 1370056 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 1370055 TACTAACGAGGA 1370044 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1370297 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 1370356 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 1370357 TACTAACGAGGA 1370368 >seq1471 Length=4017141 Score = 91.5 bits (100), Expect = 2e-13 Identities = 72/87 (83%), Gaps = 6/87 (7%) Strand=Plus/Minus Query 60057 AAAAATTTT------CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGG 60110 ||||||||| |||| || | |||||| |||||| ||||||||||||||||||||| Sbjct 2799554 AAAAATTTTAGCTGCCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGG 2799495 Query 60111 ACATACTCACCACTATACTACCGAGGA 60137 ||||| |||||||||||| |||||| Sbjct 2799494 GGATACTAACCACTATACTAACGAGGA 2799468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571675331781120