Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq3895 96.9 3e-15 seq4256 91.5 1e-13 >seq3895 Length=4157194 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 15886 TTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTT 15945 ||| ||||| ||| |||| || ||||| || || | | || |||||||| | Sbjct 2203564 TTAGAAATCTGCATCCAGAGTGAAAACATTGTCCGTTGTTTCTGCCATAACTGCAAAGCG 2203505 Query 15946 TTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTC 16005 ||||| || ||| | ||| |||||||| |||||||||||||| | ||||||||| || Sbjct 2203504 CTGATACTCTGAAACCCGCTTCTCAAAGAAGTTTGTTTTTCCTTCCAGTGAAATATTCTC 2203445 Query 16006 CATAAAATCAAAAGGATTTTTTG 16028 ||| ||||||||||| |||| || Sbjct 2203444 CATGAAATCAAAAGGGTTTTCTG 2203422 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || | ||| || | || || || ||||| || || ||||| || || | || || Sbjct 2197309 TCATCTCGACTAATGAGTTCATTGGAGAATGTCAGTCCAGGCATAAGACCCCTCTTCTTC 2197250 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | |||||||||||| ||||| ||||| || ||||| || ||||| ||||| ||||| ||| Sbjct 2197249 AGCCAAAATATAGCAGCAAAAGAACCTGAGAAGAAGATTCCTTCCACTGCAGCAAAGGCA 2197190 Query 16379 ACCAATCGCTCACC 16392 |||| || ||| || Sbjct 2197189 ACCACTCTCTCCCC 2197176 >seq4256 Length=2845976 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 16490 TCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTC 16549 ||||| |||| ||| ||||| ||||| || | ||| |||||||||||||| ||||| Sbjct 150525 TCTTTTGGATCTTTAATGTAAGTGTCTATGAGCAGACTGTACATTTCTGAATGTATATTT 150584 Query 16550 TCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602 ||||| || ||||| || ||||| || | | |||||| | ||| |||||||| Sbjct 150585 TCCATAGCAATCTGGAAGCCATAGAAAAAGCGAGCTTCAGTTATCTGTACTTC 150637 Score = 82.4 bits (90), Expect = 7e-11 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 16047 ATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCAC 16106 |||||| ||||| || | ||| || |||||||||||||| ||||||||||||||| | Sbjct 147037 ATCCCAGTTCCATCATAAGTCTGTCTGCCACAAATTCTATGTACTGTTTCATTAAAGTGC 147096 Query 16107 AGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAA 16149 | ||||| || || | || ||||| | ||| ||||| || || Sbjct 147097 AATTCATGCCAATCAGCTTTACAGGTAGTGCCTCTGTCAAGAA 147139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462396927014400