Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq8015 369 3e-97 seq19868 107 1e-18 >seq8015 Length=4129873 Score = 369 bits (408), Expect = 3e-97 Identities = 683/999 (68%), Gaps = 31/999 (3%) Strand=Plus/Minus Query 107626 ATTACCTCAACATAAC-CAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAAGTTCATACAG 107684 ||||||| ||| | || ||| ||||| | || |||||| ||| ||| ||| | | Sbjct 1371759 ATTACCTGAACCTGACTCAG-GACTGCGCGCTCTTCAAAGCCGGGCGGAGGTTTCTCGGG 1371701 Query 107685 TTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAG 107744 | ||| ||||| | || ||| || ||||| || |||||||| |||||||| || || Sbjct 1371700 TCCCCCCTGAGCCAGGAGGAGGAGGATTTCCCGATCGCCTACTCCATGGTGGTGCACGAC 1371641 Query 107745 AAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGT 107804 ||| | || | || || |||||||||| || | || || || |||||||| ||||| Sbjct 1371640 AAGGTCGAGATGTTCGAGAGGCTGCTGCGCTCCATCTACGCGCCCCAGAACATCTACTGC 1371581 Query 107805 GTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCC 107864 ||||||||||| | |||||||| || |||| ||||| || | ||| ||| Sbjct 1371580 GTCCACGTGGACCTCAAGTCCCCCGACGAGTTCAGGGAGGCCGTGCGGCGCATCGCCTCC 1371521 Query 107865 TGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCC 107924 ||||||| ||| ||||| ||||||| | | || | ||||| || || |||||| || Sbjct 1371520 TGCTTCCACAACGTCTTTTTGGCCAGCAGGACGGAGCGAGTGGTGTACGCGTCCTGGGCC 1371461 Query 107925 AGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAG 107984 || ||||| || ||||||||||| ||||| || |||||| |||| | ||||| ||| Sbjct 1371460 AGGGTGCAGGCGGACCTGAACTGCATGGAGGAGCTGCTCCGGAGCCCCGTGCCCTGGCGC 1371401 Query 107985 TACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTG 108044 ||| | || || || ||||| || ||||||||| | |||||||| |||||||| || | | Sbjct 1371400 TACCTCCTCAACACCTGCGGCACCGACTTCCCCCTCAAGACCAACGCCGAGATCGTGCGG 1371341 Query 108045 GCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTC-TGAGTCCaa 108103 |||||||| | | || || || || | |||||||| ||| ||| || | || ||| Sbjct 1371340 ACCCTCAAGTTTCTCAACGGGAAAAATAACATGGAGTCGGAGAAACCCTCGTCCGT-CAA 1371282 Query 108104 aaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGAT 108163 | |||||||||||| || | ||| ||| | || | ||| || | Sbjct 1371281 GAGGGCGCGCTGGAAATACAGCCACCGCGTGGGGGACTCGGTGGTGCGCACCGACAGGGA 1371222 Query 108164 GAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTC 108223 ||||| ||| || || | ||||||||||| || | ||||| | |||| | | Sbjct 1371221 GAAGGGCCCCCCGCCCCACGGCGCCCCCATGTTCACGGGCAGCGCCTACGTGGTGGTCAC 1371162 Query 108224 TCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGT 108283 | | |||||| | | |||| || ||||| | | || Sbjct 1371161 CAGGGGCTTTGTGCGAGCCCTCTTTGAAAACCC-----CGC---------------GGCG 1371122 Query 108284 CAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGAT 108343 || || || |||||||| ||| | ||||||||||| || || ||| | || Sbjct 1371121 CA---GCAGCT----GCCCGACGAGCACGTGTGGGCCACCCTGCACCGCATGCCGGGCAT 1371069 Query 108344 GCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAG 108403 ||| ||||| || || | || ||||||| | | || || | | ||| | ||||| Sbjct 1371068 GCCGGGCTCCGTCCCCTACAACGACAAGTATGAGGTGTCCGATGTCAACGCCGTGGCCAG 1371009 Query 108404 GCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTG 108463 || || |||||| | |||| ||||| |||||||||| |||||| || || | ||||| Sbjct 1371008 ACTGGTGAAGTGGGAATACCTGGAGGGGGATGTCAGCAGGGGGGCACCCTACCCGCCCTG 1370949 Query 108464 CTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCT 108523 | | || ||| ||| | ||| |||| | ||||||| |||||||| ||||||| || Sbjct 1370948 CACGGGGGCCCACCGGCGCGCCGTCTGTGTGTACGGGGTGGGGGACCTCCACTGGATGCT 1370889 Query 108524 CCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCA 108583 |||| ||||||||| | || |||||||||||||| || || ||||| | || | || Sbjct 1370888 GCAGACCCATCACCTGCTCGCCAACAAGTTTGACCCCAGTGTCGATGACAGCGCAATCCA 1370829 Query 108584 GTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGG 108622 |||| | || ||| | || || || |||||| | ||||| Sbjct 1370828 GTGCCTGGAGGAGCATCTGCGGCACAAGGCCCTGTATGG 1370790 >seq19868 Length=9953378 Score = 107 bits (118), Expect = 1e-18 Identities = 563/881 (64%), Gaps = 21/881 (2%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAGA-GCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAA 107746 || || |||||||| || ||| || || || |||||||| || || || | || | || Sbjct 27170 CCTCTCAGTAAAGAGGAAGCT-GAATTTCCAATTGCCTATTCAATAGTCATATATCACAA 27112 Query 107747 GATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGT 107806 || || | |||| | || || || | | ||||| |||||||| ||||| | Sbjct 27111 AATAGACATGCTTGATAGACTTCTAAGATCAATCTATGCACCTCAGAATTATTACTGCAT 27052 Query 107807 CCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTG 107866 || || || ||||| ||||| |||| | || || |||| ||| | ||||| Sbjct 27051 TCATGTTGACAAAAAGTCTCCAGAATCTTTTCTGGCTGCAGTTAAGGGAATTGTGTCCTG 26992 Query 107867 CTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAG 107926 ||| |||||||| || ||||| | |||| || || ||||| || ||| ||| Sbjct 26991 TTTCAGTAATGTCTTTATTGCCAGCCAATTGGAAAGTGTAGTGTATGCTTCATGGAGCAG 26932 Query 107927 AGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGA-GCTCAGTGCCATGGAAGT 107985 || || || ||||| ||||| ||| |||| | || |||| | || ||||| | Sbjct 26931 GGTACAGGCCGACCTCAACTGCATGAAAGATCT-CTACAGAAGAAGTATGAACTGGAAAT 26873 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGG 108045 | || | ||| ||| || | ||||| ||||| |||||||| || || || | Sbjct 26872 ATTTGATAAATTTATGTGGTATGGACTTTCCCATTAAGACCAACCAGGAAATTGTGGAGA 26813 Query 108046 CCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTA---CCTTCTGAGTCCa 108102 | || | |||||| | ||||| | || ||||| | ||||| || || Sbjct 26812 AATTGAAAGCCCTAAAGGGTGAAAACAGCTTAGAAACTGAGAAAATGCCTTCC-AG--CA 26756 Query 108103 aaaaaaaTCGCTGGAAATACCGCTATGA----GGTGACAGACACACTGTACCCTACCAGC 108158 || ||| || |||||| | | |||||| | ||| | | ||| | | | Sbjct 26755 AAGAAATACGATGGAAAAAACACTATGAAATTGTTGATGGTAA-ACTAAAGAACATGGGA 26697 Query 108159 A-AGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGT 108217 | ||| || ||| ||| ||| | | ||| | ||| | || | |||||||||||| Sbjct 26696 ATAGACAAACAACC-TCCACCTCTCAGTACACCTGTTTTCTCTGGCAGTGCCTATTTTGT 26638 Query 108218 GGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACC-CTAAATCCCAAAGACTGGTTG 108276 || | | ||||| | |||| |||| ||| | |||||| || | ||| Sbjct 26637 TGCTAGTAGGAGATTTGTAGAGTATGTGCTAGAAAACAGCAAAATCCTTGAGTTTA-TTG 26579 Query 108277 AATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTC 108336 |||||| ||||| || ||||||||||| ||| || | ||||| || |||| | || Sbjct 26578 AATGGGCTAAAGATACATATAGCCCCGATGAATACTTGTGGGCTACTATTCAAAG-AATC 26520 Query 108337 CGTGGA-TGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCC 108395 | || | | || || | ||| || | ||||||| | || || ||||||| ||| Sbjct 26519 CCTGAAGTTCCAGGGGCCGTTTCTTCCAGTGACAAGTATGATATTTCTGACATGAATGCT 26460 Query 108396 ATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTAT 108455 | || ||| | || |||||||| || ||||| ||||| | || || || ||| Sbjct 26459 CTTGCGAGGTTTGTGAAGTGGCATTATTTTGAGGGGGATGTGTCAAAAGGTGCCCCCTAT 26400 Query 108456 GCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTAC 108515 | || ||| |||||| ||| | | | | || | | || | || ||| || || Sbjct 26399 CCTCCGTGCAATGGAATTCATGTGCGTTCTGTGTGTGTATTTGGAGTGGGAGACTTGAAC 26340 Query 108516 TGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGA 108556 ||||| | ||||| || ||| | || || ||||| ||||| Sbjct 26339 TGGATGTTACAGAAACACCACTTATTTGCTAACAAATTTGA 26299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348184316954496