Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq3620 114 1e-20 >seq3620 Length=164711 Score = 114 bits (126), Expect = 1e-20 Identities = 116/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 23046 CCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCG 23105 |||||||||||||| |||||||| || ||||| || || || ||||| ||||| || | Sbjct 109488 CCACCTCGTCTTTGCTGGTGTACTCCACTATTTCTGTGCACAGGTTGCTGCACTTGATGG 109547 Query 23106 TGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCG 23165 | |||| || ||||||||| || | ||| || || |||||||| | |||||| || | Sbjct 109548 TTCCCAGGTTCTGCTGGTTGCTCTTCCTATTACAAGAGTCCTTGTACAACATGTAAGGAG 109607 Query 23166 TGCCCGTCTCGACCTGCGACTCGATGATCGC 23196 | || |||||| ||| ||||| ||||| || Sbjct 109608 TTCCTGTCTCGGTCTGAGACTCTATGATGGC 109638 Score = 111 bits (122), Expect = 1e-19 Identities = 117/154 (76%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 23342 TCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGC 23401 || || ||| |||| || ||||| || ||||| || || ||||||| || | ||| ||| Sbjct 110955 TCTACCCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAACAGGTCCCTGGCTCGC 111014 Query 23402 ACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCAC 23461 |||||| || || |||||||| |||| || | ||| || || | |||| ||||||| Sbjct 111015 TGCTCCTCCTTCCCAGTGTTCTTCTTCAGGTCAAGAAACTCAAAGATGTCCAAATGCCAC 111074 Query 23462 GGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 ||||| ||||| | |||||| || || ||||||| Sbjct 111075 GGCTCCAGGTAGATGGCAAAGGCCCCAGGTCTCT 111108 Score = 82.4 bits (90), Expect = 7e-11 Identities = 134/189 (71%), Gaps = 8/189 (4%) Strand=Plus/Plus Query 22691 GGGCTGCCTTCGTACGTTTCGTACGGACCATA-TATCGCGGCAAGTTCGCAGCTCGCCTC 22749 |||| ||||||||| ||||| || || ||||| | | || ||||||||||||| | || Sbjct 106124 GGGCAGCCTTCGTAAGTTTCATATGGCCCATACTCTTTCG-CAAGTTCGCAGCTGGATTC 106182 Query 22750 CAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTT---CAATTCGGCGGCGGCGAC 22806 ||| || |||||||| || ||||| || || | || ||| ||| | ||| ||| Sbjct 106183 CAAAGCACCGTAATAAATGGTCTCAAAAATCTGCTGGTTCAGCAACTGGGCCTCGG---G 106239 Query 22807 GCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACC 22866 |||||| | || | ||||| | |||||| || |||| ||| || || || || || Sbjct 106240 GCTTTCAAAGGGGTATCTCATCAGGATGAACGCATCTGCCAGACCTTGCACCCCAATGCC 106299 Query 22867 GATCGGTCG 22875 || || || Sbjct 106300 AATGGGGCG 106308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445655493319680