Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq3895 107 2e-18 seq3620 87.8 2e-12 >seq3895 Length=4157194 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || |||| ||| || |||||||| || ||||| | ||| ||||| | || | || || Sbjct 2197309 TCATCTCGACTAATGAGTTCATTGGAGAATGTCAGTCCAGGCATAAGACCCCTCTTCTTC 2197250 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | |||||||||||||||||| ||||| || ||||| ||||| ||||| || ||||| || Sbjct 2197249 AGCCAAAATATAGCAGCAAAAGAACCTGAGAAGAAGATTCCTTCCACTGCAGCAAAGGCA 2197190 Query 11774 ACTACTCTTTCTCC 11787 || ||||| || || Sbjct 2197189 ACCACTCTCTCCCC 2197176 >seq3620 Length=164711 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || | ||||| | ||| || || || || || || || |||||| Sbjct 104694 ACCTGAAACTCTCCTGAAAGGACTCTGCGTGTGTAGATGTTACTGGTGTAGGGCTCAATG 104753 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||| ||||| | || || |||| ||||| ||||| |||||||| | | || ||| Sbjct 104754 GACTCGTTATTCCCCAAGATCTGAGCAGTAGAAGCAGTTGGCATTGGAGAAAGGAGCAGG 104813 Query 37258 CTATTTCT 37265 || ||||| Sbjct 104814 CTGTTTCT 104821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468408231029760