Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq5886 118 1e-21 seq3895 114 2e-20 seq3620 114 2e-20 >seq5886 Length=2589288 Score = 118 bits (130), Expect = 1e-21 Identities = 143/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 9227 TTATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATC 9286 |||||| ||||| || |||| | ||| | | || ||| | |||||||||||||||||| Sbjct 346939 TTATTTTTTATTTAATGCTTCTAGAAGGCGCAGCAAATGTAGGAACAGATTGATGATATC 346880 Query 9287 CAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGA 9346 ||||||| |||||| | || || | ||| |||||||| || || || || || | Sbjct 346879 TAAGTAGAGATTGATGGCAGCCAATATATACTCTTCAGGGGACAGTCGGTGCATCAGCAA 346820 Query 9347 GTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAG 9406 || ||||||||||| || ||||| ||||| | || || || | ||||| | | ||| Sbjct 346819 ATGAGTGTCATAGATGATAAATCCACAGAACAGCAGCGCTCCCACAGCAGCAAACAACAG 346760 Query 9407 CTCCACTGTTTCACT 9421 ||| | ||| ||||| Sbjct 346759 CTCTATTGTCTCACT 346745 Score = 93.3 bits (102), Expect = 6e-14 Identities = 93/120 (78%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 || ||||||| ||| |||||||||||||| || || | |||||| |||||| ||||| Sbjct 342384 CCAGCTCCAAATTTGCTGAAATCTCTCTTGGACTGCAAAGTATACATAGTCAGTCCAAGA 342325 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAACA 9599 ||||| ||||| ||||| || |||||||| | || || ||||||| ||||| ||| Sbjct 342324 AACACAGCAGTCGTCAGAATAAAAGCTTGTAAGACAACTGATACATCAT--AAAGTGACA 342267 Score = 86.0 bits (94), Expect = 8e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906 |||| || |||||||||||||| || ||||| |||||| ||||||||||| ||||||| Sbjct 332940 CCATGCGGATGTGCACACTGGCCGAGGCCACGTTGCTGCCGTAGTTGAAGTCATCCTCGA 332881 Query 9907 TGGAGGAGCACGCGTAG 9923 |||| |||| || |||| Sbjct 332880 TGGACGAGCGCGGGTAG 332864 >seq3895 Length=4157194 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| |||| |||||| | ||| ||||| || || ||||| ||||| || || | ||| | Sbjct 2197311 CCTCATCTCGACTAATGAGTTCATTGGAGAATGTCAGTCCAGGCATAAGACCCCTCTTCT 2197252 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||||||||| | ||||| || || || ||||| |||||||| ||||| ||||||| Sbjct 2197251 TCAGCCAAAATATAGCAGCAAAAGAACCTGAGAAGAAGATTCCTTCCACTGCAGCAAAGG 2197192 Query 36300 CAATAAGTCTCTCTCC 36315 ||| | |||||| || Sbjct 2197191 CAACCACTCTCTCCCC 2197176 >seq3620 Length=164711 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| || || |||||||| || || |||||| ||| | || ||||| |||||||| | Sbjct 102991 TCCACCCATAGAAATGCATGCTGGTGAGTTTGCCATAGTTGGGCTCTGCAATATGGATGT 103050 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 ||| || || || ||||||||||| || || ||||| || |||||||| | ||| |||| Sbjct 103051 TCAAGGACTGGCTCTGATCGATGAAAGCGCCTCTGTCAGCTGCCATTTTGAGGATGGTCT 103110 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 65076 | || | |||||||| | || ||||| | |||| | || ||||||| Sbjct 103111 TCTGGGAGATTTCCCAGACTGTCTTATAGAGCTGCTTCAAGTCATCTGGAA 103161 Score = 93.3 bits (102), Expect = 6e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| || | ||| || ||||||||||| | || || || || || || ||||||| | Sbjct 118414 CACTGAACACTTTCTTGGTTTCTTTGTGCAAGTTGGAGACCGCAATCCTTGCGGCTAGGA 118473 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 ||||||| || || |||| ||||| || || ||| | || || ||||| || |||| Sbjct 118474 TGGCATAGTCGGGGTGTTTGGTAGTGAGGGTTGCAGCTGTCTCAGCAGCCAGTGTATCCA 118533 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 || || || || || ||| | |||| || ||||| |||||||| Sbjct 118534 GCTCCACTGTGGTGACACCACTGTATAGACCCTGGATTACCTTCAT 118579 Score = 89.7 bits (98), Expect = 7e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 66060 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGT 66119 || |||||||| ||||||||||||||||| || || | || | || |||| || || Sbjct 110958 ACCCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAACAGGTCCCTGGCTCGCTGC 111017 Query 66120 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGT 66179 ||||| || || || ||||| || || || || ||| | | || || |||||||||| Sbjct 111018 TCCTCCTTCCCAGTGTTCTTCTTCAGGTCAAGAAACTCAAAGATGTCCAAATGCCACGGC 111077 Query 66180 TCCAAGTATATGGC 66193 |||| ||| ||||| Sbjct 111078 TCCAGGTAGATGGC 111091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658009046607360