Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq4256 120 3e-22 seq3895 102 8e-17 >seq4256 Length=2845976 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 ||||||||||||| || |||||||| ||||| || | ||| ||||| ||||||| || | Sbjct 147937 CCTCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTCTTCT 147996 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | |||||||| || | ||||| || || || ||||| ||||| || ||||| ||||| | Sbjct 147997 TCAACCAAAAGATAGATGCAAAGGAGCCAGAGAAGAAGATTCCTTCCACTGCTGCAAAAG 148056 Query 14014 CTATTAATCGTTCTCC 14029 ||| || |||||||| Sbjct 148057 CTACTACACGTTCTCC 148072 Score = 91.5 bits (100), Expect = 1e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 13563 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTA 13622 || || || || ||||| || || ||||| | |||| || |||||||||||||| || Sbjct 146448 TTTGACATTACTCCCATCTTCTGGTATTCTCCTACTCGCTTCTCAAAGAAGTTAGTCTTT 146507 Query 13623 CCTTCCAGTGATATATTTTCCATAAAATCAAATGGATT 13660 ||||||||||| ||||| ||||| || ||||||||||| Sbjct 146508 CCTTCCAGTGAGATATTCTCCATGAAGTCAAATGGATT 146545 >seq3895 Length=4157194 Score = 102 bits (112), Expect = 8e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 ||||||||| |||||| ||||| || || ||||| | ||| ||||| | || | || | Sbjct 2197311 CCTCATCTCGACTAATGAGTTCATTGGAGAATGTCAGTCCAGGCATAAGACCCCTCTTCT 2197252 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||||||||| |||||||| || || || ||||| ||||| || ||||||||||| | Sbjct 2197251 TCAGCCAAAATATAGCAGCAAAAGAACCTGAGAAGAAGATTCCTTCCACTGCAGCAAAGG 2197192 Query 14014 C 14014 | Sbjct 2197191 C 2197191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479608643673600