Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq4256 114 1e-20 seq3895 96.9 3e-15 >seq4256 Length=2845976 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 ||||||||||||| || |||||||| ||||| || | ||| ||||| ||||||| || | Sbjct 147937 CCTCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTCTTCT 147996 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | |||||||| || | || || || || || ||||| ||||| || ||||| ||||| | Sbjct 147997 TCAACCAAAAGATAGATGCAAAGGAGCCAGAGAAGAAGATTCCTTCCACTGCTGCAAAAG 148056 Query 13802 CTATTAGTCGTTCTCC 13817 ||| || |||||||| Sbjct 148057 CTACTACACGTTCTCC 148072 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 13351 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTA 13410 || || || || ||||| || || ||||| | |||| || ||||| |||||||| || Sbjct 146448 TTTGACATTACTCCCATCTTCTGGTATTCTCCTACTCGCTTCTCAAAGAAGTTAGTCTTT 146507 Query 13411 CCTTCCAGTGATATATTTTCCATAAAATCGAATGGATT 13448 ||||||||||| ||||| ||||| || || |||||||| Sbjct 146508 CCTTCCAGTGAGATATTCTCCATGAAGTCAAATGGATT 146545 >seq3895 Length=4157194 Score = 96.9 bits (106), Expect = 3e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 ||||||||| |||||| ||||| || || ||||| | ||| ||||| | || | || | Sbjct 2197311 CCTCATCTCGACTAATGAGTTCATTGGAGAATGTCAGTCCAGGCATAAGACCCCTCTTCT 2197252 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||||||||| ||||| || || || || ||||| ||||| || ||||||||||| | Sbjct 2197251 TCAGCCAAAATATAGCAGCAAAAGAACCTGAGAAGAAGATTCCTTCCACTGCAGCAAAGG 2197192 Query 13802 C 13802 | Sbjct 2197191 C 2197191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478469727106560