Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq7604 114 1e-20 seq8631 113 5e-20 seq19881 82.4 8e-11 >seq7604 Length=1415154 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || |||||||| || |||||||| || || |||| | |||||| || || || ||| Sbjct 1124440 GTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCTTCCAGCTGCTTCCCA 1124499 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||||| | |||||||| ||||| |||||||||||||| ||||| || Sbjct 1124500 GCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTG 1124559 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| |||| |||||||| | || | |||||||| ||||| ||| Sbjct 1124560 ACATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATGGTCTTGCCTGTCAAGGTT 1124619 Query 143168 TTTACGAATATTTGCATA 143185 || || || || |||||| Sbjct 1124620 TTCACAAAGATCTGCATA 1124637 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || |||||||| || |||||||| || || |||| | |||||| || || || ||| Sbjct 1124668 GTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCTTCCAGCTGCTTCCCA 1124727 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||||| | |||||||| ||||| |||||||||||||| ||||| || Sbjct 1124728 GCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTG 1124787 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| |||| |||||||| | || | |||||||| ||||| ||| Sbjct 1124788 ACATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATGGTCTTGCCTGTCAAGGTT 1124847 Query 143168 TTTACGAATATTTGCATA 143185 || || || || |||||| Sbjct 1124848 TTCACAAAGATCTGCATA 1124865 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || |||||||| || |||||||| || || |||| | |||||| || || || ||| Sbjct 1124896 GTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCTTCCAGCTGCTTCCCA 1124955 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||||| | |||||||| ||||| |||||||||||||| ||||| || Sbjct 1124956 GCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTG 1125015 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| |||| |||||||| | || | |||||||| ||||| ||| Sbjct 1125016 ACATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATGGTCTTGCCTGTCAAGGTT 1125075 Query 143168 TTTACGAATATTTGCATA 143185 || || || || |||||| Sbjct 1125076 TTCACAAAGATCTGCATA 1125093 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || |||||||| || |||||||| || || |||| | |||||| || || || ||| Sbjct 1125124 GTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCTTCCAGCTGCTTCCCA 1125183 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||||| | |||||||| ||||| |||||||||||||| ||||| || Sbjct 1125184 GCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTG 1125243 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| |||| |||||||| | || | |||||||| ||||| ||| Sbjct 1125244 ACATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATGGTCTTGCCTGTCAAGGTT 1125303 Query 143168 TTTACGAATATTTGCATA 143185 || || || || |||||| Sbjct 1125304 TTCACAAAGATCTGCATA 1125321 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || |||||||| || |||||||| || || |||| | |||||| || || || ||| Sbjct 1125352 GTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCTTCCAGCTGCTTCCCA 1125411 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||||| | |||||||| ||||| |||||||||||||| ||||| || Sbjct 1125412 GCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTG 1125471 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| |||| |||||||| | || | |||||||| ||||| ||| Sbjct 1125472 ACATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATGGTCTTGCCTGTCAAGGTT 1125531 Query 143168 TTTACGAATATTTGCATA 143185 || || || || |||||| Sbjct 1125532 TTCACAAAGATCTGCATA 1125549 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || |||||||| || |||||||| || || |||| | |||||| || || || ||| Sbjct 1125580 GTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCTTCCAGCTGCTTCCCA 1125639 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||||| | |||||||| ||||| |||||||||||||| ||||| || Sbjct 1125640 GCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTG 1125699 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| |||| |||||||| | || | |||||||| ||||| ||| Sbjct 1125700 ACATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATGGTCTTGCCTGTCAAGGTT 1125759 Query 143168 TTTACGAATATTTGCATA 143185 || || || || |||||| Sbjct 1125760 TTCACAAAGATCTGCATA 1125777 Score = 113 bits (124), Expect = 5e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || |||||||| || |||||||| || || |||| | |||||| || || || ||| Sbjct 1125808 GTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCTTCCAGCTGCTTCCCA 1125867 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||||| | |||||||| ||||| |||||||||||||| ||||| || Sbjct 1125868 GCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTG 1125927 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| |||| |||||||| | || | |||||||| ||||| ||| Sbjct 1125928 ACATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATGGTCTTGCCTGTCAAGGTT 1125987 Query 143168 TTTACGAATATTTGCAT 143184 || || || || ||||| Sbjct 1125988 TTCACAAAGATCTGCAT 1126004 >seq8631 Length=204 Score = 113 bits (124), Expect = 5e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || |||||||| || |||||||| || || |||| | |||||| || || || ||| Sbjct 197 GTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCTTCCAGCTGCTTCCCA 138 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||||| | |||||||| ||||| |||||||||||||| ||||| || Sbjct 137 GCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTG 78 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| |||| |||||||| | || | |||||||| ||||| ||| Sbjct 77 ACATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATGGTCTTGCCTGTCAAGGTT 18 Query 143168 TTTACGAATATTTGCAT 143184 || || || || ||||| Sbjct 17 TTCACAAAGATCTGCAT 1 >seq19881 Length=10700766 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| |||| | ||||| || | ||| | || || || || || |||||||| || Sbjct 10193459 GCCACCTCTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 10193518 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || |||| ||||| || || || |||||| ||||||| | ||||| || || || Sbjct 10193519 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGG 10193578 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||||||||| || || ||| | | || | ||||| ||||||| || Sbjct 10193579 GATGCCTTCTTTGTCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTCACTGGGTTCAAC 10193638 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | |||||||| |||| || || || || || ||||| Sbjct 10193639 CTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 10193686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506888254817280