Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq7604 158 3e-33 seq8631 152 1e-31 seq6542 145 2e-29 seq4256 111 4e-19 seq19882 96.9 8e-15 seq3754 86.0 1e-11 >seq7604 Length=1415154 Score = 158 bits (174), Expect = 3e-33 Identities = 155/200 (78%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||||||||| || || ||||| || || || | |||||||| || || || ||| Sbjct 1125808 GTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCTTCCAGCTGCTTCCCA 1125867 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | |||||| ||||| ||||| || |||||||| ||||| || || || || Sbjct 1125868 GCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTG 1125927 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || || || ||||| ||||| || || ||||| || || | ||| Sbjct 1125928 ACATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATGGTCTTGCCTGTCAAGGTT 1125987 Query 104543 TTTACAAATATCTGCAtttt 104562 || ||||| ||||||||||| Sbjct 1125988 TTCACAAAGATCTGCATTTT 1126007 Score = 152 bits (168), Expect = 1e-31 Identities = 152/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||||||||| || || ||||| || || || | |||||||| || || || ||| Sbjct 1124440 GTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCTTCCAGCTGCTTCCCA 1124499 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | |||||| ||||| ||||| || |||||||| ||||| || || || || Sbjct 1124500 GCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTG 1124559 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || || || ||||| ||||| || || ||||| || || | ||| Sbjct 1124560 ACATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATGGTCTTGCCTGTCAAGGTT 1124619 Query 104543 TTTACAAATATCTGCAt 104559 || ||||| |||||||| Sbjct 1124620 TTCACAAAGATCTGCAT 1124636 Score = 152 bits (168), Expect = 1e-31 Identities = 152/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||||||||| || || ||||| || || || | |||||||| || || || ||| Sbjct 1124668 GTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCTTCCAGCTGCTTCCCA 1124727 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | |||||| ||||| ||||| || |||||||| ||||| || || || || Sbjct 1124728 GCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTG 1124787 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || || || ||||| ||||| || || ||||| || || | ||| Sbjct 1124788 ACATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATGGTCTTGCCTGTCAAGGTT 1124847 Query 104543 TTTACAAATATCTGCAt 104559 || ||||| |||||||| Sbjct 1124848 TTCACAAAGATCTGCAT 1124864 Score = 152 bits (168), Expect = 1e-31 Identities = 152/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||||||||| || || ||||| || || || | |||||||| || || || ||| Sbjct 1124896 GTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCTTCCAGCTGCTTCCCA 1124955 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | |||||| ||||| ||||| || |||||||| ||||| || || || || Sbjct 1124956 GCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTG 1125015 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || || || ||||| ||||| || || ||||| || || | ||| Sbjct 1125016 ACATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATGGTCTTGCCTGTCAAGGTT 1125075 Query 104543 TTTACAAATATCTGCAt 104559 || ||||| |||||||| Sbjct 1125076 TTCACAAAGATCTGCAT 1125092 Score = 152 bits (168), Expect = 1e-31 Identities = 152/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||||||||| || || ||||| || || || | |||||||| || || || ||| Sbjct 1125124 GTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCTTCCAGCTGCTTCCCA 1125183 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | |||||| ||||| ||||| || |||||||| ||||| || || || || Sbjct 1125184 GCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTG 1125243 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || || || ||||| ||||| || || ||||| || || | ||| Sbjct 1125244 ACATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATGGTCTTGCCTGTCAAGGTT 1125303 Query 104543 TTTACAAATATCTGCAt 104559 || ||||| |||||||| Sbjct 1125304 TTCACAAAGATCTGCAT 1125320 Score = 152 bits (168), Expect = 1e-31 Identities = 152/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||||||||| || || ||||| || || || | |||||||| || || || ||| Sbjct 1125352 GTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCTTCCAGCTGCTTCCCA 1125411 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | |||||| ||||| ||||| || |||||||| ||||| || || || || Sbjct 1125412 GCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTG 1125471 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || || || ||||| ||||| || || ||||| || || | ||| Sbjct 1125472 ACATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATGGTCTTGCCTGTCAAGGTT 1125531 Query 104543 TTTACAAATATCTGCAt 104559 || ||||| |||||||| Sbjct 1125532 TTCACAAAGATCTGCAT 1125548 Score = 152 bits (168), Expect = 1e-31 Identities = 152/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||||||||| || || ||||| || || || | |||||||| || || || ||| Sbjct 1125580 GTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCTTCCAGCTGCTTCCCA 1125639 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | |||||| ||||| ||||| || |||||||| ||||| || || || || Sbjct 1125640 GCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTG 1125699 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || || || ||||| ||||| || || ||||| || || | ||| Sbjct 1125700 ACATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATGGTCTTGCCTGTCAAGGTT 1125759 Query 104543 TTTACAAATATCTGCAt 104559 || ||||| |||||||| Sbjct 1125760 TTCACAAAGATCTGCAT 1125776 >seq8631 Length=204 Score = 152 bits (168), Expect = 1e-31 Identities = 152/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||||||||| || || ||||| || || || | |||||||| || || || ||| Sbjct 197 GTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCTTCCAGCTGCTTCCCA 138 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | |||||| ||||| ||||| || |||||||| ||||| || || || || Sbjct 137 GCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTG 78 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || || || ||||| ||||| || || ||||| || || | ||| Sbjct 77 ACATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATGGTCTTGCCTGTCAAGGTT 18 Query 104543 TTTACAAATATCTGCAt 104559 || ||||| |||||||| Sbjct 17 TTCACAAAGATCTGCAT 1 >seq6542 Length=4161791 Score = 145 bits (160), Expect = 2e-29 Identities = 130/163 (80%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547 || ||||||||||| | |||| |||||||| || ||||| || || || || |||||| Sbjct 1151729 GCTTTATGGTGGTACTTCCTCTCAAAAGGAATTGAGTACCTGGACACAATATTTTTCATC 1151788 Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607 || | ||||||||||| ||||| ||||| || || || ||||| ||||| |||||||| Sbjct 1151789 CTGAGGAAGAAATTTAACCAAATCAGTTTCCTTCACGTCTATCACCATTTCACTATGTTC 1151848 Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 |||||| | ||||| ||||| || ||| | |||||||||||| Sbjct 1151849 ACTTTGTGGTGGATTGGTATCAAGTGGGTTCCAGGAGGACAAG 1151891 Score = 100 bits (110), Expect = 7e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 78778 GATTCAATTTCATATAGCTATAGGACATACTGCTATGTCTATCTATATAGATTGTCCTTA 78837 |||||| || ||| | || | || || || || |||||||| ||||| || ||||| | Sbjct 1162477 GATTCAGTTCCATGTGACTCTGGGCCACACAGCCATGTCTATTTATATCGACTGTCCCTT 1162536 Query 78838 TCCACGATGGGTGCAATGGGCTGTAATTATATACGCGGTTACTTTTATTATTTTGTTCGG 78897 || |||| |||| |||| |||||| || || || | || |||||| | |||||||| Sbjct 1162537 CCCTAAATGGATGCACTGGGGTGTAATGATCTATGCTATCACCTTTATTTTCTTGTTCGG 1162596 Query 78898 TAACTTTTACTTCCGTACATATAAGAAACC 78927 |||||| |||| || |||||||| | ||| Sbjct 1162597 TAACTTCTACTATCGGACATATAAAATACC 1162626 >seq4256 Length=2845976 Score = 111 bits (122), Expect = 4e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 |||||| | |||| |||||||| || || ||||| || ||||| || || || ||||| Sbjct 148072 GGAGAACGTGTAGTAGCTTTTGCAGCAGTGGAAGGAATCTTCTTCTCTGGCTCCTTTGCA 148013 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 ||||||||||||||||||| ||||| | ||||| ||| | ||||| ||||||||| | Sbjct 148012 TCTATCTTTTGGTTGAAGAAGAGAGGATTAATGCCTGGACTCACTTTTTCTAACGAACTC 147953 Query 269246 ATAAGCAGGGACGA 269259 || || || || || Sbjct 147952 ATCAGTAGAGATGA 147939 Score = 98.7 bits (108), Expect = 2e-15 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 268910 TTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATA 268969 ||| | ||||| |||||||| ||||||| | | ||| || || |||||||| ||||| Sbjct 150646 TTCAGCCAAGAAGTACAGATAACTGAAGCTCGCTTTTTCTATGGCTTCCAGATTGCTATG 150587 Query 268970 GAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATAT 269016 |||||||| |||||||| ||||||||||| | ||||| ||||| || Sbjct 150586 GAAAATATACATTCAGAAATGTACAGTCTGCTCATAGACACTTACAT 150540 Score = 84.2 bits (92), Expect = 5e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 269495 GAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTCGAG 269554 || ||||| ||| || ||||||||||| ||| | ||||| ||| |||| ||||| ||| Sbjct 146548 GAGAATCCATTTGACTTCATGGAGAATATCTCACTGGAAGGAAAGACTAACTTCTTTGAG 146489 Query 269555 AAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATGTCTACTAAAGAAGAAAATATTTTC 269614 ||||| ||| | | || ||||| ||||| |||||||| | ||| || |||| Sbjct 146488 AAGCGAGTAGGAGAATACCAGAAGATGGGAGTAATGTCAAAACCCACAGATAACTCTTTC 146429 Query 269615 ACTACAGATGCAGAATTCTAA 269635 ||| |||||||| || ||| Sbjct 146428 ACTCTGGATGCAGACTTTTAA 146408 >seq19882 Length=8707265 Score = 96.9 bits (106), Expect = 8e-15 Identities = 92/118 (78%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 78491 TTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATCCTA 78550 || |||||||||||| | || |||| ||| |||| | ||| ||||| ||||| | || Sbjct 1939343 TTGTGGTGGTATTATTTTTCCAAAGCAATTGAATTCACAGACACTATTTTCTTTGTACTG 1939402 Query 78551 CGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTTA 78608 | |||||| || |||||||| ||| || ||||||||||||||| |||||||||| Sbjct 1939403 AGGAAGAAAAATAGTCAAATTACTTTCCTTCATGTATATCATCATGCCACTATGTTTA 1939460 >seq3754 Length=10286911 Score = 86.0 bits (94), Expect = 1e-11 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 104372 TTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT 104431 || |||||||| |||||||| || || | || ||||| | ||||| ||||||||||| Sbjct 5439584 TTTTGAATATTGTAGTCAGACAGCGTCCGTCCATCTTCCAACTGTTTGCCAGCAAAAATA 5439525 Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCT 104458 || || |||||||||||||| |||||| Sbjct 5439524 AGTCTTTGTTGATCAGGAGGAATTCCT 5439498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151104770380032