Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq382 116 5e-21 >seq382 Length=2585615 Score = 116 bits (128), Expect = 5e-21 Identities = 180/256 (70%), Gaps = 2/256 (1%) Strand=Plus/Minus Query 8735 GCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCC 8794 ||| | |||| || |||| ||||| | ||| || |||||||| || |||||||| Sbjct 1947293 GCAGTATTGATTATTTCAAAGCCCACTTTTCCACCAAAGGTGCTAGGCTTCCAGTACTGA 1947234 Query 8795 GGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGA 8854 || || || || | || |||| |||||||| | || || || || || || || | Sbjct 1947233 GGAGAACAAATAGCATTTCCCATAAGGCCTTTCAAAGAGAATGGTGCGCCAAGTTCCACC 1947174 Query 8855 ATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAAC 8914 ||| ||||||| || ||||| ||||| ||| | || || | | || | ||||| | Sbjct 1947173 ATGGTCTCACCAAAAATGGCACCAGGACGAGGCCTCTCTACTAGAAGGCCAGGGTACAGC 1947114 Query 8915 TCCACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974 |||| ||| || |||||||| ||||| | | ||| || || ||||| ||||||||| Sbjct 1947113 TCCATAGCATCAATGTCTCCATAAAGCTCTTCTAATTCAGCTGCCATTTCTTTTTCTCCT 1947054 Query 8975 GT--TTTATTAATAAA 8988 || | ||||||||| Sbjct 1947053 GTAATAAATTAATAAA 1947038 Score = 86.0 bits (94), Expect = 9e-12 Identities = 135/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 10029 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTC-GCGCCAAATCAGTCCTAAA 10087 ||||||||||| || || |||| |||||||| || |||| ||| | || ||| |||| Sbjct 1943152 CTTACCCCATGGCCAAGAGCTTTGGTGAAGGCTGGCCCTCTGCGGTGA-TCTGTCTTAAA 1943094 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 ||||||| ||||||||||| ||||||| | ||||| | || | ||| || || || Sbjct 1943093 GTACTGGTGGGTGAAATGTTGAGCAAAAAACGTGAACATAACATTTGAGCCTTGTGGGTC 1943034 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGAtt 10207 |||| | || | | || ||| ||| |||||||| || | ||| || || | Sbjct 1943033 GGGAATAAATTTTTGTCTCAGCAGAAATTTCTCCACAACCATTGTGGAATCTGGGAGCTC 1942974 Query 10208 ttttttACCTG 10218 || ||||||| Sbjct 1942973 CTTCTTACCTG 1942963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708348519029760