Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq4667 172 9e-39 seq5530 161 2e-35 seq2499 113 7e-21 >seq4667 Length=1791408 Score = 172 bits (190), Expect = 9e-39 Identities = 184/243 (76%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || || | | || || |||||||| ||||||||||| ||||| ||||| Sbjct 1707347 CGCTAAGCGCCACCGTAAAGTGCTCCGTGATAACATTCAAGGAATCACGAAGCCGGCTAT 1707406 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||| |||| || || ||||| ||||||||| | || || ||| |||||||||| | Sbjct 1707407 TCGCCGTTTGGCGCGCCGCGGTGGCGTCAAGCGTATTTCGGGCTTGATCTATGAAGAAAC 1707466 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || ||||| | || || ||| ||| || | |||||| || || ||||| Sbjct 1707467 TCGCGGAGTGCTGAAGGTGTTTCTGGAGAACGTGATTCGCGATGCTGTCACTTACACCGA 1707526 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||||| || ||||||||||| ||||||| | |||||||| ||||||| || || Sbjct 1707527 ACACGCTAAGCGGAAGACTGTCACTGCCATGGACGTGGTCTATGCTCTGAAACGCCAGGG 1707586 Query 16672 CCG 16674 || Sbjct 1707587 TCG 1707589 Score = 172 bits (190), Expect = 9e-39 Identities = 184/243 (76%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || || | | || || |||||||| ||||||||||| ||||| ||||| Sbjct 1712302 CGCTAAGCGCCACCGTAAAGTGCTCCGTGATAACATTCAAGGAATCACGAAGCCGGCTAT 1712243 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||| |||| || || ||||| ||||||||| | || || ||| |||||||||| | Sbjct 1712242 TCGCCGTTTGGCGCGCCGCGGTGGCGTCAAGCGTATTTCGGGCTTGATCTATGAAGAAAC 1712183 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || ||||| | || || ||| ||| || | |||||| || || ||||| Sbjct 1712182 TCGCGGAGTGCTGAAGGTGTTTCTGGAGAACGTGATTCGCGATGCTGTCACTTACACCGA 1712123 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||||| || ||||||||||| ||||||| | |||||||| ||||||| || || Sbjct 1712122 ACACGCTAAGCGGAAGACTGTCACTGCCATGGACGTGGTCTATGCTCTGAAACGCCAGGG 1712063 Query 16672 CCG 16674 || Sbjct 1712062 TCG 1712060 Score = 172 bits (190), Expect = 9e-39 Identities = 202/272 (74%), Gaps = 1/272 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| ||||| | ||||| |||||||| ||||| ||||| || || ||||| Sbjct 1741638 GCTAAGCGCCATCGGAAGGTGCTTCGTGATAACATTCAAGGTATCACGAAACCGGCTATT 1741579 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| |||||||||| ||||| || |||||| | ||||| ||| | |||||||||| Sbjct 1741578 CGTCGCTTGGCTCGTCGCGGTGGTGTAAAGCGTATTTCTGGGTTGATTTATGAAGAGACC 1741519 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || |||| | ||||| | | || || | |||||| | || || ||| Sbjct 1741518 CGTGGGGTGCTGAAAGTGTTCCTGGAAAATGTAATTCGAGATGCTGTGACTTACACTGAG 1741459 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||||||||| ||||||||||| |||||||| | || ||||| ||||||| || || Sbjct 1741458 CACGCTAAACGGAAGACTGTCACTGCCATGGATGTAGTGTATGCTCTGAAACGCCAGGGT 1741399 Query 16673 CGTAAGATTTATGGTTTTGGAAG-TTAATCTT 16703 || | | ||||| || ||| | | |||||| Sbjct 1741398 CGCACTCTCTATGGATTCGGAGGCTAAATCTT 1741367 Score = 168 bits (186), Expect = 1e-37 Identities = 183/243 (75%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||| || ||||| | ||||| ||||| |||||||| || || ||||| ||||| Sbjct 1735640 CGCTAAACGACATCGGAAGGTGCTTCGTGATAATATCCAAGGTATTACAAAGCCCGCTAT 1735581 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||| ||||||||||||| ||||| |||||| | || || || | |||||||||| Sbjct 1735580 TCGTCGCTTGGCTCGTCGTGGGGGAGTGAAGCGTATTTCGGGGCTGATTTATGAAGAGAC 1735521 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || |||||| | || || ||| ||| |||| |||||| | || || || Sbjct 1735520 TCGCGGAGTGTTGAAGGTTTTTCTGGAGAACGTGATCCGAGATGCTGTGACTTACACAGA 1735461 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || ||||||||||||||||| ||||||| | || ||||| ||||||| || || Sbjct 1735460 GCATGCCAAACGTAAGACTGTCACTGCCATGGACGTAGTTTATGCTCTGAAACGCCAGGG 1735401 Query 16672 CCG 16674 || Sbjct 1735400 TCG 1735398 Score = 158 bits (174), Expect = 2e-34 Identities = 191/260 (73%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| || || | | ||||| |||||||||||||| ||||||||||| ||||| Sbjct 1642320 GCTAAGCGCCACCGTAAAGTGCTTCGGGATAACATCCAAGGGATCACCAAGCCGGCTATT 1642379 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| ||||||| ||||| || || |||||| | || |||||| | || ||||||| Sbjct 1642380 CGTCGCTTGGCTCGACGTGGAGGCGTGAAGCGTATTTCGGGATTGATTTACGAAGAGACC 1642439 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || |||| | ||| | ||| ||| || | || ||| || || ||||| Sbjct 1642440 CGCGGAGTGCTGAAAGTGTTCTTGGAGAACGTGATTCGGGACGCTGTCACTTACACCGAA 1642499 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || || ||||| ||||| | |||||| | || ||||| |||| || || || Sbjct 1642500 CATGCCAAGCGAAAGACCGTCACGGCGATGGATGTTGTTTATGCCCTGAAGCGCCAGGGT 1642559 Query 16673 CGTAAGATTTATGGTTTTGG 16692 |||| | ||||||||||| Sbjct 1642560 CGTACTCTCTATGGTTTTGG 1642579 Score = 158 bits (174), Expect = 2e-34 Identities = 191/260 (73%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| || || | | ||||| |||||||||||||| ||||||||||| ||||| Sbjct 1644180 GCTAAGCGCCACCGTAAAGTGCTTCGGGATAACATCCAAGGGATCACCAAGCCGGCTATT 1644121 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| ||||||| ||||| || || |||||| | || |||||| | || ||||||| Sbjct 1644120 CGTCGCTTGGCTCGACGTGGAGGCGTGAAGCGTATTTCGGGATTGATTTACGAAGAGACC 1644061 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || |||| | ||| | ||| ||| || | || ||| || || ||||| Sbjct 1644060 CGCGGAGTGCTGAAAGTGTTCTTGGAGAACGTGATTCGGGACGCTGTCACTTACACCGAA 1644001 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || || ||||| ||||| | |||||| | || ||||| |||| || || || Sbjct 1644000 CATGCCAAGCGAAAGACCGTCACGGCGATGGATGTTGTTTATGCCCTGAAGCGCCAGGGT 1643941 Query 16673 CGTAAGATTTATGGTTTTGG 16692 |||| | ||||||||||| Sbjct 1643940 CGTACTCTCTATGGTTTTGG 1643921 Score = 140 bits (154), Expect = 5e-29 Identities = 194/269 (72%), Gaps = 2/269 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTC-GAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||||| ||| | | | | || ||||||||||||| || || || |||||||||| Sbjct 1614649 CGCTAAGCGCCATAGGA-AGGTGTTGAGAGATAACATCCAGGGTATTACGAAGCCAGCTA 1614591 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||| |||| || ||||| || || ||||| | || || | | || || |||| Sbjct 1614590 TCCGCCGTTTGGCGCGCCGTGGGGGCGTGAAGCGCATTTCGGGTCTCATTTACGAGGAGA 1614531 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||| | || ||||| | ||||| ||| ||| || | |||||| | || |||| Sbjct 1614530 CTCGGGGAGTGCTGAAGGTTTTCCTGGAGAACGTGATTCGAGATGCTGTTACTTACACCG 1614471 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| || || | ||||| | || ||||||||||| || |||| Sbjct 1614470 AGCACGCGAAGCGGAAGACGGTGACTGCTATGGACGTGGTTTATGCATTGAAGCGCCAAG 1614411 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | || || || ||| | ||| Sbjct 1614410 GCCGTACTCTGTACGGATTCGGAGGCTAA 1614382 >seq5530 Length=105988 Score = 161 bits (178), Expect = 2e-35 Identities = 197/269 (73%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || || ||||||| ||| || ||||||||||| || ||||||||||| ||||| Sbjct 49252 CGCCAAACGGCATCGCAAGGTTCTCCGGGATAACATCCAGGGTATCACCAAGCCCGCTAT 49193 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || || ||||||||| |||| || ||| |||| || |||| Sbjct 49192 CCGCCGCCTGGCTCGCCGCGGCGGTGTCAAGCGTATCTCCGGCTTGATCTACGAGGAGAC 49133 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||||| ||| ||| |||| || || | || || || Sbjct 49132 CCGCGGGGTGTTGAAAGTTTTCCTGGAGAACGTGATCCGCGACGCGGTGACTTACACTGA 49073 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || |||||||| || |||||||| | || || || ||||||| || || Sbjct 49072 GCACGCCAAGCGCAAGACTGTGACGGCCATGGATGTGGTGTACGCCCTGAAACGCCAGGG 49013 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 || | |||| || || ||| | |||| Sbjct 49012 TCGCACCCTTTACGGATTCGGAGGCTAAT 48984 Score = 154 bits (170), Expect = 2e-33 Identities = 180/243 (74%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || || ||||||| ||| || |||||||||||||| ||||||||||| ||||| Sbjct 83318 CGCCAAACGGCATCGCAAGGTTCTCCGGGATAACATCCAAGGCATCACCAAGCCCGCTAT 83377 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||||||||||| || || || ||||||||| |||| || || |||| || |||| Sbjct 83378 TCGCCGTCTGGCTCGCCGCGGCGGTGTCAAGCGTATCTCCGGGCTGATCTACGAGGAGAC 83437 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || |||||| | ||||| ||| ||| |||| || || || ||||| Sbjct 83438 CCGCGGGGTGTTGAAGGTTTTCCTGGAGAACGTGATCCGCGACGCGGAGACTTACACCGA 83497 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| || || ||||||| | || || || ||||||| || || Sbjct 83498 GCACGCCAAGCGCAAGACCGTGACGGCCATGGACGTGGTGTACGCCCTGAAACGCCAGGG 83557 Query 16672 CCG 16674 ||| Sbjct 83558 CCG 83560 Score = 147 bits (162), Expect = 3e-31 Identities = 180/243 (74%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || || | | || || |||||||||||||| || ||||| ||||| || || Sbjct 39399 GCCAAGCGGCACCGTAAGGTC-CTACGAGATAACATCCAGGGTATCACTAAGCCTGCCAT 39457 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || ||||| || || || ||||||||| |||| || ||| |||| ||||||| Sbjct 39458 CCGCCGCCTAGCTCGCCGCGGGGGCGTCAAGCGTATCTCCGGCTTGATCTACGAAGAGAC 39517 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || |||||| | || || ||| ||| |||| || || | || ||||| Sbjct 39518 CCGCGGGGTGTTGAAGGTTTTTCTGGAGAACGTGATCCGCGACGCGGTGACTTACACCGA 39577 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || |||||||| || ||||||| | || || || ||||||| || || Sbjct 39578 GCACGCCAAGCGCAAGACTGTGACGGCCATGGACGTGGTGTACGCCCTGAAACGCCAGGG 39637 Query 16672 CCG 16674 ||| Sbjct 39638 CCG 39640 >seq2499 Length=4660872 Score = 113 bits (124), Expect = 7e-21 Identities = 188/269 (70%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTC-GAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||||| ||| | | | | || ||||||||||||| || || | |||||||||| Sbjct 213708 CGCTAAGCGCCATAGGA-AGGTGTTGAGAGATAACATCCAGGGTATTATGAAGCCAGCTA 213766 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||| |||| | |||| || || ||||| | || || | | || || |||| Sbjct 213767 TCCGCCGTTTGGCGCACTGTGGGGGCGTGAAGCGCATTTCGGGTCTCATTTACGAGGAGA 213826 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||| | || ||||| ||||||| ||| | | || | ||||| | || |||| Sbjct 213827 CTCGGGGAGTGCTGAAGGTCTTCCTGGAGAACATGATTCGAGATGCCGTTACTTACACCG 213886 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||| || || || || || || || | ||||| | || ||||||||||| || |||| Sbjct 213887 AGCATGCAAAGCGGAAAACGGTGACTGCTATGGACGTGGTTTATGCATTGAAGCGCCAAG 213946 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | || || || ||| | ||| Sbjct 213947 GCCGTACTCTGTACGGATTCGGAGGCTAA 213975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79057001633472