Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq3895 129 7e-25 seq4256 114 2e-20 seq3620 114 2e-20 >seq3895 Length=4157194 Score = 129 bits (142), Expect = 7e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| |||| |||||| ||||| ||||| || || ||||| ||||| || || | ||| | Sbjct 2197311 CCTCATCTCGACTAATGAGTTCATTGGAGAATGTCAGTCCAGGCATAAGACCCCTCTTCT 2197252 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||||||||| | ||| || || || || |||||||||||||| ||||||||||||| Sbjct 2197251 TCAGCCAAAATATAGCAGCAAAAGAACCTGAGAAGAAGATTCCTTCCACTGCAGCAAAGG 2197192 Query 33446 CAATAAGTCTCTCTCC 33461 ||| | |||||| || Sbjct 2197191 CAACCACTCTCTCCCC 2197176 Score = 84.2 bits (92), Expect = 3e-11 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 33686 CCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 33745 ||||||||||||| || ||||| ||||||||||||||||| |||| ||||| || | Sbjct 2188656 CCAAATTTTCATTTACAATTCCATCACTGGCTGCAAAAAAAGCCAGGACATGAGAGATGA 2188597 Query 33746 AATATTTTTCGTCTGGTGTTAGTTTATTCCA 33776 | |||||||| |||| | | || || ||||| Sbjct 2188596 AGTATTTTTCTTCTGATTTCAGCTTGTTCCA 2188566 >seq4256 Length=2845976 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| |||||||| || |||||||| ||||| |||||||| ||||||| || | ||| | Sbjct 147937 CCTCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTCTTCT 147996 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | | |||||| || || || || || ||||| |||||||||||||| ||||| ||||| | Sbjct 147997 TCAACCAAAAGATAGATGCAAAGGAGCCAGAGAAGAAGATTCCTTCCACTGCTGCAAAAG 148056 Query 33446 C 33446 | Sbjct 148057 C 148057 Score = 93.3 bits (102), Expect = 5e-14 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 33564 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33623 |||||||| ||||| || || | ||||| |||||||| ||||| || ||||| || || Sbjct 150533 ATCTTTAATGTAAGTGTCTATGAGCAGACTGTACATTTCTGAATGTATATTTTCCATAGC 150592 Query 33624 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33683 ||||| || || |||||| | | ||| || || |||||||||||| | |||||||| Sbjct 150593 AATCTGGAAGCCATAGAAAAAGCGAGCTTCAGTTATCTGTACTTCTTGGCTGAATCGTTC 150652 Query 33684 CGCC 33687 | || Sbjct 150653 CACC 150656 >seq3620 Length=164711 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121 |||| || || |||||||| || || |||||| ||| | || ||||| |||||||| | Sbjct 102991 TCCACCCATAGAAATGCATGCTGGTGAGTTTGCCATAGTTGGGCTCTGCAATATGGATGT 103050 Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181 ||| || || || ||||||||||| || || ||||| || |||||||| | ||| |||| Sbjct 103051 TCAAGGACTGGCTCTGATCGATGAAAGCGCCTCTGTCAGCTGCCATTTTGAGGATGGTCT 103110 Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62232 | || | |||||||| | || ||||| | |||| | || ||||||| Sbjct 103111 TCTGGGAGATTTCCCAGACTGTCTTATAGAGCTGCTTCAAGTCATCTGGAA 103161 Score = 93.3 bits (102), Expect = 5e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 63216 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 63275 || |||||||| ||||||||||||||||| || || | || || || |||| || || Sbjct 110958 ACCCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAACAGGTCCCTGGCTCGCTGC 111017 Query 63276 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 63335 ||||| || || || ||||| || || || || ||| | | || || |||||||||| Sbjct 111018 TCCTCCTTCCCAGTGTTCTTCTTCAGGTCAAGAAACTCAAAGATGTCCAAATGCCACGGC 111077 Query 63336 TCCAAGTATATGGC 63349 |||| ||| ||||| Sbjct 111078 TCCAGGTAGATGGC 111091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622792210736640