Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq3620 100 7e-16 seq19887 84.2 6e-11 >seq3620 Length=164711 Score = 100 bits (110), Expect = 7e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| |||||||| || || |||| ||||||||||| || || ||| Sbjct 109656 GCCCAGCAGCTCTGGTACGCCATCATAGAGTCTCAGACCGAGACAGGAACTCCTTACATG 109597 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 |||||||| || || || || | ||| |||||||||| |||| || || || || Sbjct 109596 TTGTACAAGGACTCTTGTAATAGGAAGAGCAACCAGCAGAACCTGGGAACCATCAAGTGC 109537 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263 |||||||| || || || || | || |||||| Sbjct 109536 AGCAACCTGTGCACAGAAATAGTGGAGTACACC 109504 Score = 87.8 bits (96), Expect = 5e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 364943 GTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTAT 365002 ||||| |||||||||| |||| ||||||| || |||||| | || || || || | Sbjct 103185 GTTCTTTGCAGAACATCCCAGAGATTCCAGATGACTTGAAGCAGCTCTATAAGACAGTCT 103126 Query 365003 GGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTC 365062 ||||||| ||| | || || | | ||||| || || | || ||||| ||| || Sbjct 103125 GGGAAATCTCCCAGAAGACCATCCTCAAAATGGCAGCTGACAGAGGCGCTTTCATCGATC 103066 Query 365063 AGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGC 365122 |||||||||| || ||| | || | |||| | || | ||| || || ||||| Sbjct 103065 AGAGCCAGTCCTTGAACATCCATATTGCAGAGCCCAACTATGGCAAACTCACCAGCATGC 103006 Query 365123 ATTTCTACGGGTGGAA 365138 ||||||| |||||||| Sbjct 103005 ATTTCTATGGGTGGAA 102990 >seq19887 Length=6038298 Score = 84.2 bits (92), Expect = 6e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 111390 ACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGATGGAAATGGATCACGT 111449 |||||||| || || || | |||||| || || |||||||||| |||||||||||| Sbjct 4360418 ACAAATGCTAAAGAGCTCTCTGCAAAAGGAGTGAAGATTTGGGATGCCAATGGATCACGT 4360359 Query 111450 GACTTTCTAGATTCAGTTGGTCTTGTCGACAACGAAGAAGGTGATCTCGGACCAGTTTAC 111509 ||||| | ||| | ||| | | | || ||||| ||| | |||||||| || Sbjct 4360358 GACTTCTTGGATAAACAAGGTTTCAGTAAGAGAGAGGAAGGGGATTTGGGACCAGTATAT 4360299 Query 111510 GGATTTCAATGGCGCCACTTTGGTGCAGACTACAAA 111545 || || || ||| | |||||||| || || |||||| Sbjct 4360298 GGTTTCCAGTGGAGACACTTTGGGGCTGAATACAAA 4360263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303021218764928