Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq19881 113 4e-20 seq10545 107 2e-18 seq7604 104 2e-17 seq8631 98.7 9e-16 >seq19881 Length=10700766 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 ||||||| | || ||||||||| | ||| | ||| |||||||| || |||||||| || Sbjct 10193458 AGCCACCTCTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 10193517 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 || |||||| || || ||||||||||| || |||| | | ||||||||| || | Sbjct 10193518 ACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGG 10193577 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 |||| ||||||||||| ||| || || | | ||| | || || ||| || | Sbjct 10193578 GGATGCCTTCTTTGTCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTCACTGGGTTCAA 10193637 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || || || || || || || || ||||||||| Sbjct 10193638 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 10193687 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || ||||||||| | ||| | ||| |||||||| || |||||||| || | Sbjct 10194029 CCACCTCTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 10194088 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || ||||||||||| || |||| | | ||||||||| || ||| Sbjct 10194089 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 10194148 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| ||| || || | | ||| | || || ||| ||| | Sbjct 10194149 ATGCCTTCTTTGTCCTGGATCTTGGCTTTCACATTCTCAATGGTGTCACTGGGCTCCACC 10194208 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || || || || || || |||||||| Sbjct 10194209 TCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 10194255 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || ||||||||| | ||| | ||| |||||||| || |||||||| || | Sbjct 10194257 CCACCTCTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 10194316 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || ||||||||||| || |||| | | ||||||||| || ||| Sbjct 10194317 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 10194376 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| ||| || || | | ||| | || || ||| ||| | Sbjct 10194377 ATGCCTTCTTTGTCCTGGATCTTGGCTTTCACATTCTCAATGGTGTCACTGGGCTCCACC 10194436 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || || || || || || |||||||| Sbjct 10194437 TCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 10194483 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || ||||||||| | ||| | ||| |||||||| || |||||||| || | Sbjct 10194485 CCACCTCTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 10194544 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || ||||||||||| || |||| | | ||||||||| || ||| Sbjct 10194545 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 10194604 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| ||| || || | | ||| | || || ||| ||| | Sbjct 10194605 ATGCCTTCTTTGTCCTGGATCTTGGCTTTCACATTCTCAATGGTGTCACTGGGCTCCACC 10194664 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || || || || || || |||||||| Sbjct 10194665 TCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 10194711 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || ||||||||| | ||| | ||| |||||||| || |||||||| || | Sbjct 10194713 CCACCTCTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 10194772 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || ||||||||||| || |||| | | ||||||||| || ||| Sbjct 10194773 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 10194832 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| ||| || || | | ||| | || || ||| || | Sbjct 10194833 ATGCCTTCTTTGTCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTCACTGGGTTCAACC 10194892 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || || || || || || || || ||||||||| Sbjct 10194893 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 10194940 >seq10545 Length=227 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || ||||||||| | ||| | ||| |||||||| || |||||||| || | Sbjct 227 CCACCTCTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 168 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || ||||||||||| || |||| | | ||||||||| || ||| Sbjct 167 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 108 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| ||| || || | | ||| | || || ||| || | Sbjct 107 ATGCCTTCTTTGTCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTCACTGGGTTCAACC 48 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || || || || || || |||||||| Sbjct 47 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1 >seq7604 Length=1415154 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || || || | || || || || || |||||||| || | Sbjct 1124410 CCACCCCGGAGGCGTAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGAC 1124469 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||||| ||| || |||||||| || || |||| || | |||||| || ||||| Sbjct 1124470 AGGGTGCGCCCGTCTTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGA 1124529 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| |||||| ||||| | ||| | || || ||| ||| | Sbjct 1124530 ATGCCTTCTTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACT 1124589 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || | ||||| || || |||||||| Sbjct 1124590 TCTAGGGTGATGGTCTTGCCTGTCAAGGTTTTCACAAAGATCTGCAT 1124636 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| || | || | || || || || || |||||||| || | Sbjct 1124638 CCACCCCGGAGGCGCAGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGAC 1124697 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||||| ||| || |||||||| || || |||| || | |||||| || ||||| Sbjct 1124698 AGGGTGCGCCCGTCTTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGA 1124757 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| |||||| ||||| | ||| | || || ||| ||| | Sbjct 1124758 ATGCCTTCTTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACT 1124817 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || | ||||| || || |||||||| Sbjct 1124818 TCTAGGGTGATGGTCTTGCCTGTCAAGGTTTTCACAAAGATCTGCAT 1124864 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| || | || | || || || || || |||||||| || | Sbjct 1124866 CCACCCCGGAGGCGCAGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGAC 1124925 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||||| ||| || |||||||| || || |||| || | |||||| || ||||| Sbjct 1124926 AGGGTGCGCCCGTCTTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGA 1124985 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| |||||| ||||| | ||| | || || ||| ||| | Sbjct 1124986 ATGCCTTCTTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACT 1125045 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || | ||||| || || |||||||| Sbjct 1125046 TCTAGGGTGATGGTCTTGCCTGTCAAGGTTTTCACAAAGATCTGCAT 1125092 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| || | || | || || || || || |||||||| || | Sbjct 1125094 CCACCCCGGAGGCGCAGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGAC 1125153 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||||| ||| || |||||||| || || |||| || | |||||| || ||||| Sbjct 1125154 AGGGTGCGCCCGTCTTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGA 1125213 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| |||||| ||||| | ||| | || || ||| ||| | Sbjct 1125214 ATGCCTTCTTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACT 1125273 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || | ||||| || || |||||||| Sbjct 1125274 TCTAGGGTGATGGTCTTGCCTGTCAAGGTTTTCACAAAGATCTGCAT 1125320 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| || | || | || || || || || |||||||| || | Sbjct 1125322 CCACCCCGGAGGCGCAGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGAC 1125381 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||||| ||| || |||||||| || || |||| || | |||||| || ||||| Sbjct 1125382 AGGGTGCGCCCGTCTTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGA 1125441 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| |||||| ||||| | ||| | || || ||| ||| | Sbjct 1125442 ATGCCTTCTTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACT 1125501 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || | ||||| || || |||||||| Sbjct 1125502 TCTAGGGTGATGGTCTTGCCTGTCAAGGTTTTCACAAAGATCTGCAT 1125548 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| || | || | || || || || || |||||||| || | Sbjct 1125550 CCACCCCGGAGGCGCAGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGAC 1125609 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||||| ||| || |||||||| || || |||| || | |||||| || ||||| Sbjct 1125610 AGGGTGCGCCCGTCTTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGA 1125669 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| |||||| ||||| | ||| | || || ||| ||| | Sbjct 1125670 ATGCCTTCTTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACT 1125729 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || | ||||| || || |||||||| Sbjct 1125730 TCTAGGGTGATGGTCTTGCCTGTCAAGGTTTTCACAAAGATCTGCAT 1125776 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| || | || | || || || || || |||||||| || | Sbjct 1125778 CCACCCCGGAGGCGCAGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGAC 1125837 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||||| ||| || |||||||| || || |||| || | |||||| || ||||| Sbjct 1125838 AGGGTGCGCCCGTCTTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGA 1125897 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| |||||| ||||| | ||| | || || ||| ||| | Sbjct 1125898 ATGCCTTCTTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACT 1125957 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || | ||||| || || |||||||| Sbjct 1125958 TCTAGGGTGATGGTCTTGCCTGTCAAGGTTTTCACAAAGATCTGCAT 1126004 >seq8631 Length=204 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || || || || || |||||||| || || ||||||| ||| || |||||||| || Sbjct 197 GTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCTTCCAGCTGCTTCCCA 138 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 || |||| || | |||||| || ||||| || ||||||||||| |||||| |||| Sbjct 137 GCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTG 78 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | ||| | || || ||| ||| | || | ||| | ||| || || || | ||| Sbjct 77 ACATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATGGTCTTGCCTGTCAAGGTT 18 Query 131218 TTTACGAAAATCTGCAT 131234 || || || |||||||| Sbjct 17 TTCACAAAGATCTGCAT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471895363215360