Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq19881 111 1e-19 seq10545 105 5e-18 seq7604 100 2e-16 seq8631 87.8 1e-12 >seq19881 Length=10700766 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || | ||| || | ||| || ||||||||||| || ||||||||||| | | Sbjct 10194029 CCACCTCTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 10194088 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || |||| || ||||| ||| | || |||| ||| ||||| || Sbjct 10194089 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 10194148 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| |||||||| || || ||| ||||| | | | ||||| | ||||||| Sbjct 10194149 ATGCCTTCTTTGTCCTGGATCTTGGCT--TTCACATTCTCAATGGTGTCACTGGGCTCCA 10194206 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || || ||||| || || ||||| |||||||| Sbjct 10194207 CCTCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 10194255 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || | ||| || | ||| || ||||||||||| || ||||||||||| | | Sbjct 10194257 CCACCTCTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 10194316 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || |||| || ||||| ||| | || |||| ||| ||||| || Sbjct 10194317 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 10194376 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| |||||||| || || ||| ||||| | | | ||||| | ||||||| Sbjct 10194377 ATGCCTTCTTTGTCCTGGATCTTGGCT--TTCACATTCTCAATGGTGTCACTGGGCTCCA 10194434 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || || ||||| || || ||||| |||||||| Sbjct 10194435 CCTCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 10194483 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || | ||| || | ||| || ||||||||||| || ||||||||||| | | Sbjct 10194485 CCACCTCTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 10194544 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || |||| || ||||| ||| | || |||| ||| ||||| || Sbjct 10194545 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 10194604 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| |||||||| || || ||| ||||| | | | ||||| | ||||||| Sbjct 10194605 ATGCCTTCTTTGTCCTGGATCTTGGCT--TTCACATTCTCAATGGTGTCACTGGGCTCCA 10194662 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || || ||||| || || ||||| |||||||| Sbjct 10194663 CCTCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 10194711 Score = 105 bits (116), Expect = 5e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || | ||| || | ||| || ||||||||||| || ||||||||||| | | Sbjct 10193460 CCACCTCTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 10193519 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || |||| || ||||| ||| | || |||| ||| ||||| || Sbjct 10193520 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 10193579 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| |||||||| || || ||| ||||| | | | ||||| | ||| || Sbjct 10193580 ATGCCTTCTTTGTCCTGGATCTTGGCT--TTCACGTTCTCAATGGTGTCACTGGGTTCAA 10193637 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| || || ||||| || || ||||| |||||||| Sbjct 10193638 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 10193686 Score = 105 bits (116), Expect = 5e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || | ||| || | ||| || ||||||||||| || ||||||||||| | | Sbjct 10194713 CCACCTCTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 10194772 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || |||| || ||||| ||| | || |||| ||| ||||| || Sbjct 10194773 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 10194832 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| |||||||| || || ||| ||||| | | | ||||| | ||| || Sbjct 10194833 ATGCCTTCTTTGTCCTGGATCTTGGCT--TTCACGTTCTCAATGGTGTCACTGGGTTCAA 10194890 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| || || ||||| || || ||||| |||||||| Sbjct 10194891 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 10194939 >seq10545 Length=227 Score = 105 bits (116), Expect = 5e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || | ||| || | ||| || ||||||||||| || ||||||||||| | | Sbjct 227 CCACCTCTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 168 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || |||| || ||||| ||| | || |||| ||| ||||| || Sbjct 167 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 108 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| |||||||| || || ||| ||||| | | | ||||| | ||| || Sbjct 107 ATGCCTTCTTTGTCCTGGATCTTGGCT--TTCACGTTCTCAATGGTGTCACTGGGTTCAA 50 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| || || ||||| || || ||||| |||||||| Sbjct 49 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1 >seq7604 Length=1415154 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||||| ||||| || || || ||||||||||| | | Sbjct 1125778 CCACCCCGGAGGCGCAGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGAC 1125837 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| |||| |||| || || || ||| | || | || ||| || || ||| Sbjct 1125838 AGGGTGCGCCCGTCTTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGA 1125897 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||| |||||||| |||| ||| || | | | ||||| | |||||| | Sbjct 1125898 ATGCCTTCTTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACT 1125957 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 || | ||||||||| || || |||| ||||| ||||| ||||||||||| Sbjct 1125958 TCTAGGGTGATGGTCTTGCCTGTCAAGGTTTTCACAAAGATCTGCATTTT 1126007 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||||| ||||| || || || ||||||||||| | | Sbjct 1124638 CCACCCCGGAGGCGCAGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGAC 1124697 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| |||| |||| || || || ||| | || | || ||| || || ||| Sbjct 1124698 AGGGTGCGCCCGTCTTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGA 1124757 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||| |||||||| |||| ||| || | | | ||||| | |||||| | Sbjct 1124758 ATGCCTTCTTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACT 1124817 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || || |||| ||||| ||||| |||||||| Sbjct 1124818 TCTAGGGTGATGGTCTTGCCTGTCAAGGTTTTCACAAAGATCTGCAT 1124864 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||||| ||||| || || || ||||||||||| | | Sbjct 1124866 CCACCCCGGAGGCGCAGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGAC 1124925 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| |||| |||| || || || ||| | || | || ||| || || ||| Sbjct 1124926 AGGGTGCGCCCGTCTTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGA 1124985 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||| |||||||| |||| ||| || | | | ||||| | |||||| | Sbjct 1124986 ATGCCTTCTTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACT 1125045 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || || |||| ||||| ||||| |||||||| Sbjct 1125046 TCTAGGGTGATGGTCTTGCCTGTCAAGGTTTTCACAAAGATCTGCAT 1125092 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||||| ||||| || || || ||||||||||| | | Sbjct 1125094 CCACCCCGGAGGCGCAGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGAC 1125153 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| |||| |||| || || || ||| | || | || ||| || || ||| Sbjct 1125154 AGGGTGCGCCCGTCTTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGA 1125213 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||| |||||||| |||| ||| || | | | ||||| | |||||| | Sbjct 1125214 ATGCCTTCTTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACT 1125273 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || || |||| ||||| ||||| |||||||| Sbjct 1125274 TCTAGGGTGATGGTCTTGCCTGTCAAGGTTTTCACAAAGATCTGCAT 1125320 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||||| ||||| || || || ||||||||||| | | Sbjct 1125322 CCACCCCGGAGGCGCAGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGAC 1125381 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| |||| |||| || || || ||| | || | || ||| || || ||| Sbjct 1125382 AGGGTGCGCCCGTCTTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGA 1125441 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||| |||||||| |||| ||| || | | | ||||| | |||||| | Sbjct 1125442 ATGCCTTCTTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACT 1125501 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || || |||| ||||| ||||| |||||||| Sbjct 1125502 TCTAGGGTGATGGTCTTGCCTGTCAAGGTTTTCACAAAGATCTGCAT 1125548 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||||| ||||| || || || ||||||||||| | | Sbjct 1125550 CCACCCCGGAGGCGCAGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGAC 1125609 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| |||| |||| || || || ||| | || | || ||| || || ||| Sbjct 1125610 AGGGTGCGCCCGTCTTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGA 1125669 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||| |||||||| |||| ||| || | | | ||||| | |||||| | Sbjct 1125670 ATGCCTTCTTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACT 1125729 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || || |||| ||||| ||||| |||||||| Sbjct 1125730 TCTAGGGTGATGGTCTTGCCTGTCAAGGTTTTCACAAAGATCTGCAT 1125776 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| ||||| || || || ||||||||||| | || ||| |||| Sbjct 1124425 AGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCT 1124484 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||| || || || ||| | || | || ||| || || ||| | ||| |||||||| Sbjct 1124485 TCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCC 1124544 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 |||| ||| || | | | ||||| | |||||| ||| | ||||||||| Sbjct 1124545 TGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATGGTC 1124604 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || |||| ||||| ||||| |||||||| Sbjct 1124605 TTGCCTGTCAAGGTTTTCACAAAGATCTGCAT 1124636 >seq8631 Length=204 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 ||||| ||||| || || || ||||||||||| | || ||| |||| |||| || Sbjct 203 TGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCTTCCAGCTGC 144 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || ||| | || | || ||| || || ||| | ||| |||||||| |||| Sbjct 143 TTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGGATTTTG 84 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||| || | | | ||||| | |||||| ||| | ||||||||| || || ||| Sbjct 83 GCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATGGTCTTGCCTGTC 24 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 | ||||| ||||| |||||||| Sbjct 23 AAGGTTTTCACAAAGATCTGCAT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404989733752960