Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq3895 114 2e-20 seq3620 111 2e-19 >seq3895 Length=4157194 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| |||| |||||| | ||| ||||| || || ||||| ||||| || || | ||| | Sbjct 2197311 CCTCATCTCGACTAATGAGTTCATTGGAGAATGTCAGTCCAGGCATAAGACCCCTCTTCT 2197252 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||||||||| | ||||| || || || ||||| |||||||| ||||| ||||||| Sbjct 2197251 TCAGCCAAAATATAGCAGCAAAAGAACCTGAGAAGAAGATTCCTTCCACTGCAGCAAAGG 2197192 Query 32803 CAATAAGTCTCTCTCC 32818 ||| | |||||| || Sbjct 2197191 CAACCACTCTCTCCCC 2197176 Score = 82.4 bits (90), Expect = 1e-10 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 33158 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 33217 ||| ||||| |||||||| ||||| || | ||||||||||||||| ||||| | || | Sbjct 2185978 CACCTCTTCTACTGTCCAGAATGAAGCTTGTGCCTTTTTATACATTTTCCACAAATCCGG 2185919 Query 33218 ATATTGAATTGGAAAAATAACAAATCTATTTGGATTTTTT 33257 ||||| | ||| || || ||||||| | ||||||||| Sbjct 2185918 GTATTGCAGTGGGAAGATGACAAATCGACGAGGATTTTTT 2185879 >seq3620 Length=164711 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 |||| || || |||||||| || || |||||| ||| | || ||||| |||||||| | Sbjct 102991 TCCACCCATAGAAATGCATGCTGGTGAGTTTGCCATAGTTGGGCTCTGCAATATGGATGT 103050 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 ||| || || || ||||||||||| || || ||||| || |||||||| | || |||| Sbjct 103051 TCAAGGACTGGCTCTGATCGATGAAAGCGCCTCTGTCAGCTGCCATTTTGAGGATGGTCT 103110 Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62087 | || | |||||||| | || ||||| | |||| | || ||||||| Sbjct 103111 TCTGGGAGATTTCCCAGACTGTCTTATAGAGCTGCTTCAAGTCATCTGGAA 103161 Score = 102 bits (112), Expect = 1e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| || | ||| || ||||||||||| | || || || || || || |||||||| | Sbjct 118414 CACTGAACACTTTCTTGGTTTCTTTGTGCAAGTTGGAGACCGCAATCCTTGCGGCTAGGA 118473 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 ||||||| || || |||| ||||| || || ||| | || || ||||| || |||| Sbjct 118474 TGGCATAGTCGGGGTGTTTGGTAGTGAGGGTTGCAGCTGTCTCAGCAGCCAGTGTATCCA 118533 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975 || || || || |||||| | |||| || ||||| |||||||| Sbjct 118534 GCTCCACTGTGGTGACACCACTGTATAGACCCTGGATTACCTTCAT 118579 Score = 93.3 bits (102), Expect = 5e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 63071 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 63130 || |||||||| ||||||||||||||||| || || | || || || |||| || || Sbjct 110958 ACCCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAACAGGTCCCTGGCTCGCTGC 111017 Query 63131 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 63190 ||||| || || || ||||| || || || || ||| | | || || |||||||||| Sbjct 111018 TCCTCCTTCCCAGTGTTCTTCTTCAGGTCAAGAAACTCAAAGATGTCCAAATGCCACGGC 111077 Query 63191 TCCAAGTATATGGC 63204 |||| ||| ||||| Sbjct 111078 TCCAGGTAGATGGC 111091 Score = 82.4 bits (90), Expect = 1e-10 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 62426 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 62485 ||| | || || || ||||| || | || | || ||||| || || | || || ||| Sbjct 106130 CCTTCGTAAGTTTCATATGGCCCATACTCTTTCGCAAGTTCGCAGCTGGATTCCAAAGCA 106189 Query 62486 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAAT 62545 |||||||||||||| || || |||| || || || || || || |||| ||||| Sbjct 106190 CCGTAATAAATGGTCTCAAAAATCTGCTGGTTCAGCAACTGGGCCTCGGGGCTTTCAAAG 106249 Query 62546 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTA 62605 || || | | || || ||||| ||||| | ||||| || ||||| || || || | | Sbjct 106250 GGGTATCTCATCAGGATGAACGCATCTGCCAGACCTTGCACCCCAATGCCAATGGGGCGA 106309 Query 62606 TGTCTCTTATTAGAGATTTCAGC 62628 || | || || ||||| || || Sbjct 106310 TGGCGTTTGTTGGAGATCTCGGC 106332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633474352358400