Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq19881 107 2e-18 seq10545 104 2e-17 seq7604 91.5 1e-13 seq8631 89.7 4e-13 >seq19881 Length=10700766 Score = 107 bits (118), Expect = 2e-18 Identities = 143/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || || || || |||||| || || || ||| Sbjct 10193490 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 10193549 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| || || |||||||||||||| ||||| ||| Sbjct 10193550 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTGTCCTGGATCTTGGCTTTC 10193609 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| ||| || |||| ||| | || ||||| ||||| || Sbjct 10193610 ACGTTCTCAATGGTGTCACTGGGTTCAACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 10193669 Query 114366 TTTACAAAAATCTGCATGG 114384 || ||||| |||||||||| Sbjct 10193670 TTCACAAAGATCTGCATGG 10193688 Score = 107 bits (118), Expect = 2e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | || | || || | ||| | || || || || || |||||||| || Sbjct 10194710 ATACCACCTCTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA 10194769 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || |||||| || || || ||||| |||| || | ||| ||||| || Sbjct 10194770 GACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGG 10194829 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || |||||||||||||| ||||| ||| | | |||| |||||| ||| ||| Sbjct 10194830 GGGATGCCTTCTTTGTCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTCACTGGGTTCA 10194889 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 114384 || |||| ||| | || ||||| ||||| || || ||||| |||||||||| Sbjct 10194890 ACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGG 10194941 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | || | || || | ||| | || || || || || |||||||| || Sbjct 10194026 ATACCACCTCTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA 10194085 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || |||||| || || || ||||| |||| || | ||| ||||| || Sbjct 10194086 GACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGG 10194145 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || |||||||||||||| ||||| ||| | | |||| |||||| ||| || Sbjct 10194146 GGGATGCCTTCTTTGTCCTGGATCTTGGCTTTCACATTCTCAATGGTGTCACTGGGCTCC 10194205 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || ||||| ||||| || || ||||| |||||||| Sbjct 10194206 ACCTCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 10194255 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | || | || || | ||| | || || || || || |||||||| || Sbjct 10194254 ATACCACCTCTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA 10194313 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || |||||| || || || ||||| |||| || | ||| ||||| || Sbjct 10194314 GACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGG 10194373 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || |||||||||||||| ||||| ||| | | |||| |||||| ||| || Sbjct 10194374 GGGATGCCTTCTTTGTCCTGGATCTTGGCTTTCACATTCTCAATGGTGTCACTGGGCTCC 10194433 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || ||||| ||||| || || ||||| |||||||| Sbjct 10194434 ACCTCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 10194483 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | || | || || | ||| | || || || || || |||||||| || Sbjct 10194482 ATACCACCTCTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA 10194541 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || |||||| || || || ||||| |||| || | ||| ||||| || Sbjct 10194542 GACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGG 10194601 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || |||||||||||||| ||||| ||| | | |||| |||||| ||| || Sbjct 10194602 GGGATGCCTTCTTTGTCCTGGATCTTGGCTTTCACATTCTCAATGGTGTCACTGGGCTCC 10194661 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || ||||| ||||| || || ||||| |||||||| Sbjct 10194662 ACCTCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 10194711 >seq10545 Length=227 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || || || || |||||| || || || ||| Sbjct 197 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 138 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| || || |||||||||||||| ||||| ||| Sbjct 137 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTGTCCTGGATCTTGGCTTTC 78 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| ||| || |||| ||| | || ||||| ||||| || Sbjct 77 ACGTTCTCAATGGTGTCACTGGGTTCAACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 18 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 17 TTCACAAAGATCTGCAT 1 >seq7604 Length=1415154 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | || || | || | || |||||||| || |||||||| || Sbjct 1124635 ATACCACCCCGGAGGCGCAGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCT 1124694 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||||| || || || ||||| |||| | | ||| || || ||| Sbjct 1124695 GACAGGGTGCGCCCGTCTTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGA 1124754 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||||||||| || || || | | |||| |||||| ||| || Sbjct 1124755 GGAATGCCTTCTTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCT 1124814 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || ||||| |||| ||||| ||||| |||||||| Sbjct 1124815 ACTTCTAGGGTGATGGTCTTGCCTGTCAAGGTTTTCACAAAGATCTGCAT 1124864 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | || || | || | || |||||||| || |||||||| || Sbjct 1124863 ATACCACCCCGGAGGCGCAGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCT 1124922 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||||| || || || ||||| |||| | | ||| || || ||| Sbjct 1124923 GACAGGGTGCGCCCGTCTTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGA 1124982 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||||||||| || || || | | |||| |||||| ||| || Sbjct 1124983 GGAATGCCTTCTTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCT 1125042 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || ||||| |||| ||||| ||||| |||||||| Sbjct 1125043 ACTTCTAGGGTGATGGTCTTGCCTGTCAAGGTTTTCACAAAGATCTGCAT 1125092 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | || || | || | || |||||||| || |||||||| || Sbjct 1125091 ATACCACCCCGGAGGCGCAGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCT 1125150 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||||| || || || ||||| |||| | | ||| || || ||| Sbjct 1125151 GACAGGGTGCGCCCGTCTTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGA 1125210 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||||||||| || || || | | |||| |||||| ||| || Sbjct 1125211 GGAATGCCTTCTTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCT 1125270 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || ||||| |||| ||||| ||||| |||||||| Sbjct 1125271 ACTTCTAGGGTGATGGTCTTGCCTGTCAAGGTTTTCACAAAGATCTGCAT 1125320 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | || || | || | || |||||||| || |||||||| || Sbjct 1125319 ATACCACCCCGGAGGCGCAGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCT 1125378 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||||| || || || ||||| |||| | | ||| || || ||| Sbjct 1125379 GACAGGGTGCGCCCGTCTTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGA 1125438 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||||||||| || || || | | |||| |||||| ||| || Sbjct 1125439 GGAATGCCTTCTTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCT 1125498 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || ||||| |||| ||||| ||||| |||||||| Sbjct 1125499 ACTTCTAGGGTGATGGTCTTGCCTGTCAAGGTTTTCACAAAGATCTGCAT 1125548 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | || || | || | || |||||||| || |||||||| || Sbjct 1125547 ATACCACCCCGGAGGCGCAGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCT 1125606 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||||| || || || ||||| |||| | | ||| || || ||| Sbjct 1125607 GACAGGGTGCGCCCGTCTTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGA 1125666 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||||||||| || || || | | |||| |||||| ||| || Sbjct 1125667 GGAATGCCTTCTTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCT 1125726 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || ||||| |||| ||||| ||||| |||||||| Sbjct 1125727 ACTTCTAGGGTGATGGTCTTGCCTGTCAAGGTTTTCACAAAGATCTGCAT 1125776 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | || || | || | || |||||||| || |||||||| || Sbjct 1125775 ATACCACCCCGGAGGCGCAGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCT 1125834 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||||| || || || ||||| |||| | | ||| || || ||| Sbjct 1125835 GACAGGGTGCGCCCGTCTTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGA 1125894 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||||||||| || || || | | |||| |||||| ||| || Sbjct 1125895 GGAATGCCTTCTTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCT 1125954 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || ||||| |||| ||||| ||||| |||||||| Sbjct 1125955 ACTTCTAGGGTGATGGTCTTGCCTGTCAAGGTTTTCACAAAGATCTGCAT 1126004 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || |||||||| || |||||||| || || || || ||||| || || || ||| Sbjct 1124440 GTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCTTCCAGCTGCTTCCCA 1124499 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | ||| || || |||||||||||||||||||| || || || Sbjct 1124500 GCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTG 1124559 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| || || || | ||| | || ||||| |||| ||| Sbjct 1124560 ACATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATGGTCTTGCCTGTCAAGGTT 1124619 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 1124620 TTCACAAAGATCTGCAT 1124636 >seq8631 Length=204 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || |||||||| || |||||||| || || || || ||||| || || || ||| Sbjct 197 GTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCTTCCAGCTGCTTCCCA 138 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | ||| || || |||||||||||||||||||| || || || Sbjct 137 GCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTG 78 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| || || || | ||| | || ||||| |||| ||| Sbjct 77 ACATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATGGTCTTGCCTGTCAAGGTT 18 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 17 TTCACAAAGATCTGCAT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420032483797248