Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq3620 111 3e-19 seq4256 93.3 8e-14 >seq3620 Length=164711 Score = 111 bits (122), Expect = 3e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 245003 ACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGC 245062 |||| | ||||||||| || || ||||||||||| ||| |||||||||| | |||| Sbjct 110958 ACCCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAACAGGTCCCTGGCTCGCTGC 111017 Query 245063 TCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGC 245122 || ||| |||||||||||| |||| || | ||| ||||||| ||| | ||||| ||| Sbjct 111018 TCCTCCTTCCCAGTGTTCTTCTTCAGGTCAAGAAACTCAAAGATGTCCAAATGCCACGGC 111077 Query 245123 TCCATGTAGACAGCGAGGGCGCCGGG 245148 |||| ||||| || | ||| || || Sbjct 111078 TCCAGGTAGATGGCAAAGGCCCCAGG 111103 Score = 86.0 bits (94), Expect = 1e-11 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 244704 CCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGG 244763 ||||||| || | ||||||||| || || || ||||| ||||| ||||||||||||| Sbjct 109488 CCACCTCGTCTTTGCTGGTGTACTCCACTATTTCTGTGCACAGGTTGCTGCACTTGATGG 109547 Query 244764 TGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCC 244823 | ||||||| ||| || ||| ||| || || | ||||||||| | |||| | || Sbjct 109548 TTCCCAGGTTCTGCTGGTTGCTCTTCCTATTACAAGAGTCCTTGTACAACATGTAAGGAG 109607 Query 244824 CCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCC 244883 || |||||| ||| | | | || | || |||||| | | ||||| ||| | Sbjct 109608 TTCCTGTCTCGGTCTGAGACTCTATGATGGCGTACCAGAGCTGCTGGGCCTTCACCACCT 109667 Query 244884 TGCGAGCCTTGCCCT 244898 |||| || ||||| Sbjct 109668 TGCGGGCACGGCCCT 109682 >seq4256 Length=2845976 Score = 93.3 bits (102), Expect = 8e-14 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 ||||| ||| | || || || || ||||||||||| ||| |||| || || ||||| ||| Sbjct 148060 GTAGCTTTTGCAGCAGTGGAAGGAATCTTCTTCTCTGGCTCCTTTGCATCTATCTTTTGG 148001 Query 42768 CTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGAC 42827 | ||| ||| | | ||||| |||||||| || || |||||||||||||| || || Sbjct 148000 TTGAAGAAGAGAGGATTAATGCCTGGACTCACTTTTTCTAACGAACTCATCAGTAGAGAT 147941 Query 42828 GAGG 42831 |||| Sbjct 147940 GAGG 147937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944104248407040