Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq7604 87.8 2e-12 seq2606 86.0 7e-12 seq1471 82.4 8e-11 >seq7604 Length=1415154 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1151337 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 1151396 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 1151397 TACTAACGAGGAT 1151409 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062 || ||||| || | | |||||||||| ||||||||||||||||||||| ||||| ||| Sbjct 1164202 TTATCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACC 1164261 Query 57063 ACTATACTACCGAGGA 57078 ||||||||| |||||| Sbjct 1164262 ACTATACTAACGAGGA 1164277 >seq2606 Length=4432526 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1370115 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 1370056 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 1370055 TACTAACGAGGA 1370044 >seq1471 Length=4017141 Score = 82.4 bits (90), Expect = 8e-11 Identities = 70/87 (80%), Gaps = 6/87 (7%) Strand=Plus/Minus Query 56998 AAAAATTTT------CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGG 57051 ||||||||| |||| || | | ||| |||||| ||||||||||||||||||||| Sbjct 2799554 AAAAATTTTAGCTGCCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGG 2799495 Query 57052 ACATACTCACCACTATACTACCGAGGA 57078 ||||| |||||||||||| |||||| Sbjct 2799494 GGATACTAACCACTATACTAACGAGGA 2799468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543077648655360