Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq19881 136 4e-27 seq10545 134 1e-26 seq7604 123 2e-23 seq8631 109 5e-19 >seq19881 Length=10700766 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| | || || || ||| Sbjct 10193686 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGAACCCAGT 10193627 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | |||| || |||| |||||||| || || ||| | ||||| Sbjct 10193626 GACACCATTGAGAACG-TGAAAGCCAAGATCCAGGACAAAGAAGGCATCCCCCCTGACCA 10193568 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| |||||||| || | |||||||| |||||||| Sbjct 10193567 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAA 10193508 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | || || ||| | ||||||||| ||||||| ||| Sbjct 10193507 CATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGTCTGAGAGGTGGC 10193459 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| | || || ||| ||| Sbjct 10194255 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTAGAGGTGGAGCCCAGT 10194196 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | |||| || |||| |||||||| || || ||| | ||||| Sbjct 10194195 GACACCATTGAGAATGTGAAAGCCAAGATCCAGGACAAAGAAGGCATCCCCCCTGACCAG 10194136 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| |||||||| || | |||||||| ||||||||| Sbjct 10194135 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 10194076 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| | || || ||| | ||||||||| ||||||| || Sbjct 10194075 ATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGTCTGAGAGGTGG 10194029 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| | || || ||| ||| Sbjct 10194483 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTAGAGGTGGAGCCCAGT 10194424 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | |||| || |||| |||||||| || || ||| | ||||| Sbjct 10194423 GACACCATTGAGAATGTGAAAGCCAAGATCCAGGACAAAGAAGGCATCCCCCCTGACCAG 10194364 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| |||||||| || | |||||||| ||||||||| Sbjct 10194363 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 10194304 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| | || || ||| | ||||||||| ||||||| || Sbjct 10194303 ATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGTCTGAGAGGTGG 10194257 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| | || || ||| ||| Sbjct 10194711 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTAGAGGTGGAGCCCAGT 10194652 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | |||| || |||| |||||||| || || ||| | ||||| Sbjct 10194651 GACACCATTGAGAATGTGAAAGCCAAGATCCAGGACAAAGAAGGCATCCCCCCTGACCAG 10194592 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| |||||||| || | |||||||| ||||||||| Sbjct 10194591 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 10194532 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| | || || ||| | ||||||||| ||||||| || Sbjct 10194531 ATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGTCTGAGAGGTGG 10194485 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| | || || || ||| Sbjct 10194939 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGAACCCAGT 10194880 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | |||| || |||| |||||||| || || ||| | ||||| Sbjct 10194879 GACACCATTGAGAACG-TGAAAGCCAAGATCCAGGACAAAGAAGGCATCCCCCCTGACCA 10194821 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| |||||||| || | |||||||| |||||||| Sbjct 10194820 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAA 10194761 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || || ||| | ||||||||| ||||||| || Sbjct 10194760 CATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGTCTGAGAGGTGG 10194713 >seq10545 Length=227 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| | || || || ||| Sbjct 1 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGAACCCAGT 60 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | |||| || |||| |||||||| || || ||| | ||||| Sbjct 61 GACACCATTGAGAACG-TGAAAGCCAAGATCCAGGACAAAGAAGGCATCCCCCCTGACCA 119 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| |||||||| || | |||||||| |||||||| Sbjct 120 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAA 179 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || || ||| | ||||||||| ||||||| || Sbjct 180 CATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGTCTGAGAGGTGG 227 >seq7604 Length=1415154 Score = 123 bits (136), Expect = 2e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || || || ||||| | || ||||| ||||||||| | || || ||| || Sbjct 1126007 AAAATGCAGATCTTTGTGAAAACCTTGACAGGCAAGACCATCACCCTAGAAGTAGAGCCC 1125948 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || | ||||||| |||||||| || ||||| | || Sbjct 1125947 AGTGACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCAGAT 1125888 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| || | || | || || || |||||||| |||| ||||||||| |||||| Sbjct 1125887 CAGCAGAGGTTGATCTTTGCTGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCAGACTAC 1125828 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||||| || ||| | || ||||| |||| ||||| Sbjct 1125827 AACATCCAGAAAGAATCCACTCTGCACCTGGTCCTGCG 1125790 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| | || ||||| ||||||||| | || || ||| ||| Sbjct 1124636 ATGCAGATCTTTGTGAAAACCTTGACAGGCAAGACCATCACCCTAGAAGTAGAGCCCAGT 1124577 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | ||||||| |||||||| || ||||| | || || Sbjct 1124576 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCAGATCAG 1124517 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | || | || || || |||||||| |||| ||||||||| ||||||||| Sbjct 1124516 CAGAGGTTGATCTTTGCTGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCAGACTACAAC 1124457 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| || ||| | || ||||| ||||| || || Sbjct 1124456 ATCCAGAAAGAATCCACTCTGCACTTGGTCCTACG 1124422 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| | || ||||| ||||||||| | || || ||| ||| Sbjct 1124864 ATGCAGATCTTTGTGAAAACCTTGACAGGCAAGACCATCACCCTAGAAGTAGAGCCCAGT 1124805 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | ||||||| |||||||| || ||||| | || || Sbjct 1124804 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCAGATCAG 1124745 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | || | || || || |||||||| |||| ||||||||| ||||||||| Sbjct 1124744 CAGAGGTTGATCTTTGCTGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCAGACTACAAC 1124685 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| || ||| | || ||||| |||| ||||| Sbjct 1124684 ATCCAGAAAGAATCCACTCTGCACCTGGTCCTGCG 1124650 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| | || ||||| ||||||||| | || || ||| ||| Sbjct 1125092 ATGCAGATCTTTGTGAAAACCTTGACAGGCAAGACCATCACCCTAGAAGTAGAGCCCAGT 1125033 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | ||||||| |||||||| || ||||| | || || Sbjct 1125032 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCAGATCAG 1124973 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | || | || || || |||||||| |||| ||||||||| ||||||||| Sbjct 1124972 CAGAGGTTGATCTTTGCTGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCAGACTACAAC 1124913 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| || ||| | || ||||| |||| ||||| Sbjct 1124912 ATCCAGAAAGAATCCACTCTGCACCTGGTCCTGCG 1124878 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| | || ||||| ||||||||| | || || ||| ||| Sbjct 1125320 ATGCAGATCTTTGTGAAAACCTTGACAGGCAAGACCATCACCCTAGAAGTAGAGCCCAGT 1125261 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | ||||||| |||||||| || ||||| | || || Sbjct 1125260 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCAGATCAG 1125201 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | || | || || || |||||||| |||| ||||||||| ||||||||| Sbjct 1125200 CAGAGGTTGATCTTTGCTGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCAGACTACAAC 1125141 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| || ||| | || ||||| |||| ||||| Sbjct 1125140 ATCCAGAAAGAATCCACTCTGCACCTGGTCCTGCG 1125106 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| | || ||||| ||||||||| | || || ||| ||| Sbjct 1125548 ATGCAGATCTTTGTGAAAACCTTGACAGGCAAGACCATCACCCTAGAAGTAGAGCCCAGT 1125489 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | ||||||| |||||||| || ||||| | || || Sbjct 1125488 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCAGATCAG 1125429 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | || | || || || |||||||| |||| ||||||||| ||||||||| Sbjct 1125428 CAGAGGTTGATCTTTGCTGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCAGACTACAAC 1125369 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| || ||| | || ||||| |||| ||||| Sbjct 1125368 ATCCAGAAAGAATCCACTCTGCACCTGGTCCTGCG 1125334 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| | || ||||| ||||||||| | || || ||| ||| Sbjct 1125776 ATGCAGATCTTTGTGAAAACCTTGACAGGCAAGACCATCACCCTAGAAGTAGAGCCCAGT 1125717 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | ||||||| |||||||| || ||||| | || || Sbjct 1125716 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCAGATCAG 1125657 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | || | || || || |||||||| |||| ||||||||| ||||||||| Sbjct 1125656 CAGAGGTTGATCTTTGCTGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCAGACTACAAC 1125597 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| || ||| | || ||||| |||| ||||| Sbjct 1125596 ATCCAGAAAGAATCCACTCTGCACCTGGTCCTGCG 1125562 >seq8631 Length=204 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| | || ||||| ||||||||| | || || ||| ||| Sbjct 1 ATGCAGATCTTTGTGAAAACCTTGACAGGCAAGACCATCACCCTAGAAGTAGAGCCCAGT 60 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | ||||||| |||||||| || ||||| | || || Sbjct 61 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCAGATCAG 120 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | || | || || || |||||||| |||| ||||||||| ||||||||| Sbjct 121 CAGAGGTTGATCTTTGCTGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCAGACTACAAC 180 Query 38424 ATCCAAAAGGAAGCGACGCTGCA 38446 ||||| || ||| | || ||||| Sbjct 181 ATCCAGAAAGAATCCACTCTGCA 203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500048357007360