Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24]
19,904 sequences; 2,202,483,752 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq19881 136 4e-27
seq10545 134 1e-26
seq7604 123 2e-23
seq8631 109 5e-19
>seq19881
Length=10700766
Score = 136 bits (150), Expect = 4e-27
Identities = 169/229 (74%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || || || || || ||||| ||||||||| | || || || |||
Sbjct 10193686 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGAACCCAGT 10193627
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | |||| | |||| || |||| |||||||| || || ||| | |||||
Sbjct 10193626 GACACCATTGAGAACG-TGAAAGCCAAGATCCAGGACAAAGAAGGCATCCCCCCTGACCA 10193568
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||| |||| || | || ||||| |||||||| || | |||||||| ||||||||
Sbjct 10193567 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAA 10193508
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
|||||| ||||| | || || ||| | ||||||||| ||||||| |||
Sbjct 10193507 CATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGTCTGAGAGGTGGC 10193459
Score = 134 bits (148), Expect = 1e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || || || || || ||||| ||||||||| | || || ||| |||
Sbjct 10194255 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTAGAGGTGGAGCCCAGT 10194196
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | |||| || |||| |||||||| || || ||| | |||||
Sbjct 10194195 GACACCATTGAGAATGTGAAAGCCAAGATCCAGGACAAAGAAGGCATCCCCCCTGACCAG 10194136
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||| |||| || | || ||||| |||||||| || | |||||||| |||||||||
Sbjct 10194135 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 10194076
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
||||| ||||| | || || ||| | ||||||||| ||||||| ||
Sbjct 10194075 ATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGTCTGAGAGGTGG 10194029
Score = 134 bits (148), Expect = 1e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || || || || || ||||| ||||||||| | || || ||| |||
Sbjct 10194483 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTAGAGGTGGAGCCCAGT 10194424
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | |||| || |||| |||||||| || || ||| | |||||
Sbjct 10194423 GACACCATTGAGAATGTGAAAGCCAAGATCCAGGACAAAGAAGGCATCCCCCCTGACCAG 10194364
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||| |||| || | || ||||| |||||||| || | |||||||| |||||||||
Sbjct 10194363 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 10194304
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
||||| ||||| | || || ||| | ||||||||| ||||||| ||
Sbjct 10194303 ATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGTCTGAGAGGTGG 10194257
Score = 134 bits (148), Expect = 1e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || || || || || ||||| ||||||||| | || || ||| |||
Sbjct 10194711 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTAGAGGTGGAGCCCAGT 10194652
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | |||| || |||| |||||||| || || ||| | |||||
Sbjct 10194651 GACACCATTGAGAATGTGAAAGCCAAGATCCAGGACAAAGAAGGCATCCCCCCTGACCAG 10194592
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||| |||| || | || ||||| |||||||| || | |||||||| |||||||||
Sbjct 10194591 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 10194532
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
||||| ||||| | || || ||| | ||||||||| ||||||| ||
Sbjct 10194531 ATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGTCTGAGAGGTGG 10194485
Score = 134 bits (148), Expect = 1e-26
Identities = 168/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || || || || || ||||| ||||||||| | || || || |||
Sbjct 10194939 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGAACCCAGT 10194880
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | |||| | |||| || |||| |||||||| || || ||| | |||||
Sbjct 10194879 GACACCATTGAGAACG-TGAAAGCCAAGATCCAGGACAAAGAAGGCATCCCCCCTGACCA 10194821
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||| |||| || | || ||||| |||||||| || | |||||||| ||||||||
Sbjct 10194820 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAA 10194761
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|||||| ||||| | || || ||| | ||||||||| ||||||| ||
Sbjct 10194760 CATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGTCTGAGAGGTGG 10194713
>seq10545
Length=227
Score = 134 bits (148), Expect = 1e-26
Identities = 168/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || || || || || ||||| ||||||||| | || || || |||
Sbjct 1 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGAACCCAGT 60
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | |||| | |||| || |||| |||||||| || || ||| | |||||
Sbjct 61 GACACCATTGAGAACG-TGAAAGCCAAGATCCAGGACAAAGAAGGCATCCCCCCTGACCA 119
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||| |||| || | || ||||| |||||||| || | |||||||| ||||||||
Sbjct 120 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAA 179
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|||||| ||||| | || || ||| | ||||||||| ||||||| ||
Sbjct 180 CATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGTCTGAGAGGTGG 227
>seq7604
Length=1415154
Score = 123 bits (136), Expect = 2e-23
Identities = 158/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|||||||| || || || ||||| | || ||||| ||||||||| | || || ||| ||
Sbjct 1126007 AAAATGCAGATCTTTGTGAAAACCTTGACAGGCAAGACCATCACCCTAGAAGTAGAGCCC 1125948
Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360
| |||| | | | | | || | ||||||| |||||||| || ||||| | ||
Sbjct 1125947 AGTGACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCAGAT 1125888
Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420
|| ||| || | || | || || || |||||||| |||| ||||||||| ||||||
Sbjct 1125887 CAGCAGAGGTTGATCTTTGCTGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCAGACTAC 1125828
Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
|||||||| || ||| | || ||||| |||| |||||
Sbjct 1125827 AACATCCAGAAAGAATCCACTCTGCACCTGGTCCTGCG 1125790
Score = 118 bits (130), Expect = 1e-21
Identities = 155/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || ||||| | || ||||| ||||||||| | || || ||| |||
Sbjct 1124636 ATGCAGATCTTTGTGAAAACCTTGACAGGCAAGACCATCACCCTAGAAGTAGAGCCCAGT 1124577
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || | ||||||| |||||||| || ||||| | || ||
Sbjct 1124576 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCAGATCAG 1124517
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||| || | || | || || || |||||||| |||| ||||||||| |||||||||
Sbjct 1124516 CAGAGGTTGATCTTTGCTGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCAGACTACAAC 1124457
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
||||| || ||| | || ||||| ||||| || ||
Sbjct 1124456 ATCCAGAAAGAATCCACTCTGCACTTGGTCCTACG 1124422
Score = 118 bits (130), Expect = 1e-21
Identities = 155/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || ||||| | || ||||| ||||||||| | || || ||| |||
Sbjct 1124864 ATGCAGATCTTTGTGAAAACCTTGACAGGCAAGACCATCACCCTAGAAGTAGAGCCCAGT 1124805
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || | ||||||| |||||||| || ||||| | || ||
Sbjct 1124804 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCAGATCAG 1124745
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||| || | || | || || || |||||||| |||| ||||||||| |||||||||
Sbjct 1124744 CAGAGGTTGATCTTTGCTGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCAGACTACAAC 1124685
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
||||| || ||| | || ||||| |||| |||||
Sbjct 1124684 ATCCAGAAAGAATCCACTCTGCACCTGGTCCTGCG 1124650
Score = 118 bits (130), Expect = 1e-21
Identities = 155/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || ||||| | || ||||| ||||||||| | || || ||| |||
Sbjct 1125092 ATGCAGATCTTTGTGAAAACCTTGACAGGCAAGACCATCACCCTAGAAGTAGAGCCCAGT 1125033
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || | ||||||| |||||||| || ||||| | || ||
Sbjct 1125032 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCAGATCAG 1124973
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||| || | || | || || || |||||||| |||| ||||||||| |||||||||
Sbjct 1124972 CAGAGGTTGATCTTTGCTGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCAGACTACAAC 1124913
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
||||| || ||| | || ||||| |||| |||||
Sbjct 1124912 ATCCAGAAAGAATCCACTCTGCACCTGGTCCTGCG 1124878
Score = 118 bits (130), Expect = 1e-21
Identities = 155/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || ||||| | || ||||| ||||||||| | || || ||| |||
Sbjct 1125320 ATGCAGATCTTTGTGAAAACCTTGACAGGCAAGACCATCACCCTAGAAGTAGAGCCCAGT 1125261
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || | ||||||| |||||||| || ||||| | || ||
Sbjct 1125260 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCAGATCAG 1125201
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||| || | || | || || || |||||||| |||| ||||||||| |||||||||
Sbjct 1125200 CAGAGGTTGATCTTTGCTGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCAGACTACAAC 1125141
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
||||| || ||| | || ||||| |||| |||||
Sbjct 1125140 ATCCAGAAAGAATCCACTCTGCACCTGGTCCTGCG 1125106
Score = 118 bits (130), Expect = 1e-21
Identities = 155/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || ||||| | || ||||| ||||||||| | || || ||| |||
Sbjct 1125548 ATGCAGATCTTTGTGAAAACCTTGACAGGCAAGACCATCACCCTAGAAGTAGAGCCCAGT 1125489
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || | ||||||| |||||||| || ||||| | || ||
Sbjct 1125488 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCAGATCAG 1125429
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||| || | || | || || || |||||||| |||| ||||||||| |||||||||
Sbjct 1125428 CAGAGGTTGATCTTTGCTGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCAGACTACAAC 1125369
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
||||| || ||| | || ||||| |||| |||||
Sbjct 1125368 ATCCAGAAAGAATCCACTCTGCACCTGGTCCTGCG 1125334
Score = 118 bits (130), Expect = 1e-21
Identities = 155/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || ||||| | || ||||| ||||||||| | || || ||| |||
Sbjct 1125776 ATGCAGATCTTTGTGAAAACCTTGACAGGCAAGACCATCACCCTAGAAGTAGAGCCCAGT 1125717
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || | ||||||| |||||||| || ||||| | || ||
Sbjct 1125716 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCAGATCAG 1125657
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||| || | || | || || || |||||||| |||| ||||||||| |||||||||
Sbjct 1125656 CAGAGGTTGATCTTTGCTGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCAGACTACAAC 1125597
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
||||| || ||| | || ||||| |||| |||||
Sbjct 1125596 ATCCAGAAAGAATCCACTCTGCACCTGGTCCTGCG 1125562
>seq8631
Length=204
Score = 109 bits (120), Expect = 5e-19
Identities = 146/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || ||||| | || ||||| ||||||||| | || || ||| |||
Sbjct 1 ATGCAGATCTTTGTGAAAACCTTGACAGGCAAGACCATCACCCTAGAAGTAGAGCCCAGT 60
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || | ||||||| |||||||| || ||||| | || ||
Sbjct 61 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCAGATCAG 120
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||| || | || | || || || |||||||| |||| ||||||||| |||||||||
Sbjct 121 CAGAGGTTGATCTTTGCTGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCAGACTACAAC 180
Query 38424 ATCCAAAAGGAAGCGACGCTGCA 38446
||||| || ||| | || |||||
Sbjct 181 ATCCAGAAAGAATCCACTCTGCA 203
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500048357007360
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