Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq2194 138 9e-27 >seq2194 Length=1538764 Score = 138 bits (152), Expect = 9e-27 Identities = 364/548 (66%), Gaps = 6/548 (1%) Strand=Plus/Minus Query 517610 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 517669 ||||| || || ||||||||||||||||| | | | || || | ||| |||||||| Sbjct 1378449 GCACCGTAAGCCACAGCTTCATCAGGATTGATGCTCTTGTTCAGCTCTTTCCCATTGAAG 1378390 Query 517670 AAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAAT 517728 |||| || |||| ||| | ||| |||||||| | |||||| ||||| | |||||| Sbjct 1378389 AAATCCTGCAGGAGTT-TCTGAATCTTGGGAATACGGGTTGATCCACCAACCAGTACAAT 1378331 Query 517729 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 517788 ||||| | ||||||||| || ||||| | |||| | | || || || || || || Sbjct 1378330 GTCATGGATCTGTGATTTGTCTAGTTTGGCATCCCGCAGGGCCTTCTCCACAGGATCCAG 1378271 Query 517789 ACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATT 517848 | | | |||| || | | | ||||| || |||||| |||| | | | Sbjct 1378270 AGTGCCACGGAACAGATCAGCATTTAACTCTTCAAAACGAGCTCTGGTAATTGAGGTGTA 1378211 Query 517849 ATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAG 517908 | ||||||| || || | | || |||| |||||| | | ||||| |||||| || Sbjct 1378210 AAAATCAATGCCCTCATAGAGCGAGTCAATTTCAATACTGGCCTGAGTGCTAGAAGAGAG 1378151 Query 517909 TGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGAT-TGAT 517967 | ||| |||||||||||||||||||| | ||| | || | || | | || | | | Sbjct 1378150 AGTACGCTTAGCACGTTCACATGCTGTGCGTAGCCGGCGAACTGC-TCTCTTGTTCTCAG 1378092 Query 517968 TCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAA-CACACCATGTTACAAGACGATTA 518026 | | ||| | || | || | |||||| || ||| | | || | || | ||| ||| Sbjct 1378091 TAATATCCTTCTTGTGCTTACGCTTGAATTCAGCAATGAAATGAT-TGACCATACGGTTA 1378033 Query 518027 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 518086 ||||| || || || || || | |||| || | || | | |||| || | ||| Sbjct 1378032 TCAAAGTCCTCCCCACCTAAGTGGGTATCACCAGCAGTTGACTTCACTTCAAAGATGCCA 1377973 Query 518087 TCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACA 518146 || |||| || | | | ||||| || ||||| || | ||||| ||||| ||| Sbjct 1377972 TCCTCAATAGTGAGGATTGAAACATCGAAAGTGCCACCCCCAAGGTCAAAGATAAGGACA 1377913 Query 518147 TTCATTTC 518154 ||| |||| Sbjct 1377912 TTCCTTTC 1377905 Score = 104 bits (114), Expect = 2e-16 Identities = 109/142 (77%), Gaps = 1/142 (1%) Strand=Plus/Minus Query 518172 CAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGAC 518231 |||| ||||| |||| ||||||||||||||||||||| || || || | |||||||||| Sbjct 1377786 CAAG-CCATAAGCAATAGCAGCAGCAGTTGGTTCATTGATGATCCTGAGCACATTAAGAC 1377728 Query 518232 CAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAA 518291 | ||||| |||| |||||||| ||||| || | || || || || || || || || | Sbjct 1377727 CTGCAATGGTTCCAGCATCTTTTGTGGCCTGGCGCTGGGAGTCATTGAAGTAGGCTGGTA 1377668 Query 518292 CAGTAATAACGGCATCAGTTAC 518313 | || | || |||| ||| || Sbjct 1377667 CCGTGACCACTGCATTAGTAAC 1377646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3779834697956224