Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq7163 241 2e-58 seq2194 176 6e-39 >seq7163 Length=1716790 Score = 241 bits (266), Expect = 2e-58 Identities = 779/1203 (65%), Gaps = 15/1203 (1%) Strand=Plus/Minus Query 6953 CCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCGTTCCCTTCA 7012 ||||| |||||||| || || || | || |||| ||| || || || | || Sbjct 669081 CCAAG-GACAGAGGAGTGACATCGAGCAGCAACAAGTCCTGCACGTTCTCAGACTTGTCC 669023 Query 7013 CCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATC 7072 ||| | | |||||| || || || | || || || || || ||||| |||||||| || Sbjct 669022 CCCATGAGGATGGCAGCCTGCACTGCAGCGCCATAAGCTACAGCCTCGTCGGGGTTGATG 668963 Query 7073 GTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATT 7132 | || || |||||||| ||||| || | || | | | || || || ||||| Sbjct 668962 CTCTTGTTGAGTTCTTTGCCGTTGAAGAAGTCTTGCAGGAGCTTCTGGATCTTGGGGATG 668903 Query 7133 CGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCT 7192 || || || || || |||| || || || | | | || || | || | || Sbjct 668902 CGGGTGGAGCCGCCCACCAGCACAATCTCCTGAATCTGGCCCTTGTCTAGTTTGGCATCG 668843 Query 7193 CGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCA 7252 || || | || || || || |||| ||||| | ||| || ||||| Sbjct 668842 CGCAGGGCCTTCTCCACGGGCTCCAAGGTGCCGCGGAAGAGGTCGGCGTTGAGCTCCTCG 668783 Query 7253 AAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCA 7312 || || ||||| || ||||| || ||||| || | ||| ||||| | ||| || || || Sbjct 668782 AAGCGGGCACGAGTGATGGAAGTGTAGAAGTCGATGCCCTCGTACAGCGAGTCGATCTCG 668723 Query 7313 ATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAA 7372 ||| | | || | | ||| | ||| ||||| || ||||| || || || || | Sbjct 668722 ATGCTGGCCTGGGTGGAGGAACTCAGCGTGCGCTTAGCCCGCTCGCAGGCAGTGCGCAGC 668663 Query 7373 CGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCA 7432 || || | || ||| ||| | | || || ||| || ||||| || ||||| || Sbjct 668662 CGCCGCACAGCCCGCTTGTTGCTGCCGATGTCGCGCTTGTGCTTACGCTTGAACTCCTCC 668603 Query 7433 GAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCG 7492 |||||| | | | ||| || || || ||||||| ||| || ||||| || Sbjct 668602 ACGAAGTGGTTCACCATGCGGTTATCAAAGTCCTCCCCACCCAGGTGGGTGTCCCCGGCC 668543 Query 7493 GTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCA 7552 || | || || || |||||||| | || ||| | | | || |||||||| || || Sbjct 668542 GTGGACTTCACCTCGAAGATACCGTCCTCGATGGTAAGGATGGAGACATCAAAAGTGCCG 668483 Query 7553 CCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTG------TTCTTATCGAGA 7606 || |||||||| || ||||| |||||| | ||| || | | || ||||| || Sbjct 668482 CCGCCCAGGTCGAAGATGAGCACGTTCTTCTCGCCGGCCCCGCTGCCTTTTTTATCCAGC 668423 Query 7607 CCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCA 7666 || || |||||||| |||||||| || || || || || || || ||| ||||| | Sbjct 668422 CCATAAGCGATAGCGGCCGCCGTGGGCTCGTTGATGATCCGCAGCACGTTGAGGCCGGTG 668363 Query 7667 ATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTT 7726 || || | || || || || || || || || || ||||| |||||||| || || || Sbjct 668362 ATGGTGCCAGCGTCCTTGGTGGCCTGGCGCTGGGAGTCGTTGAAGTAGGCGGGCACGGTG 668303 Query 7727 ACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTA 7786 |||||||||| | || || || || || | || ||||| || ||||| ||||| Sbjct 668302 ACGACCGCGTTCTGCACCTTGCGGCCCAGGTAGGCCTCGGCGATCTCCTTCATCTTGGTG 668243 Query 7787 AGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTT-TCACCGTTAAAATCAAC 7845 || ||||| || ||||| || | | | | || | ||| || || || | || || Sbjct 668242 AGCACCATGGAGCTGATCTCCTCCGG-GAAGAAGGTCTTGTTCTCGCCCTTGTACTCCAC 668184 Query 7846 TTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATC 7905 | | | |||| || |||| | || | || | | ||| | ||||| || Sbjct 668183 CTGCACCTTGGGCTTG-CCGC--CCTCGCTCACCACGCGGAAAGGCCAGTGCTTCATGTC 668127 Query 7906 GTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGT 7965 | || ||| |||| |||| | ||||| || ||||| || || || | || Sbjct 668126 GGACTGCACCGTGGGGTCGTCGTACTTGCGGCCGATGAGGCGCTTGGCGTCGAAGATGGT 668067 Query 7966 GTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATT 8025 ||| ||||||||||||| |||||||| || || || ||||| || || || | Sbjct 668066 GTTGGTGGGGTTCATGGCGACCTGGTTCTTGGCGGCATCGCCGATGAGGCGCTC---GGT 668010 Query 8026 TTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTC 8085 || || || || || || || || || || || || |||||||| || || || || Sbjct 668009 GTCGGTGAAGGCCACATAGCTCGGCGTGGTGCGGTTGCCCTGGTCGTTGGCGATGATCTC 667950 Query 8086 TACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGAT 8145 || | ||| || |||| || ||||| |||||||| || || |||||||| ||||| Sbjct 667949 CACCTTGCCGTGCTGAAAGACACCCACGCAGGAATACGTGGTGCCCAAATCAATGCCGAT 667890 Query 8146 TGC 8148 || Sbjct 667889 CGC 667887 >seq2194 Length=1538764 Score = 176 bits (194), Expect = 6e-39 Identities = 363/540 (67%), Gaps = 0/540 (0%) Strand=Plus/Minus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || ||||| || || || ||||| || || || | || ||||| ||||| || || || Sbjct 1378449 GCACCGTAAGCCACAGCTTCATCAGGATTGATGCTCTTGTTCAGCTCTTTCCCATTGAAG 1378390 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 ||||| | | || ||||| || || || || || |||||||| |||| || || Sbjct 1378389 AAATCCTGCAGGAGTTTCTGAATCTTGGGAATACGGGTTGATCCACCAACCAGTACAATG 1378330 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 |||| | | ||||| || | || | || || || | || || ||||| |||| | Sbjct 1378329 TCATGGATCTGTGATTTGTCTAGTTTGGCATCCCGCAGGGCCTTCTCCACAGGATCCAGA 1378270 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 |||||||| || | | || |||||||| || | |||||| || || || Sbjct 1378269 GTGCCACGGAACAGATCAGCATTTAACTCTTCAAAACGAGCTCTGGTAATTGAGGTGTAA 1378210 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 ||||||| ||| || || | ||| ||||||||||| | | || | | ||||| | Sbjct 1378209 AAATCAATGCCCTCATAGAGCGAGTCAATTTCAATACTGGCCTGAGTGCTAGAAGAGAGA 1378150 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || ||||| || || ||||| || || |||| || |||| || | | ||| | | | Sbjct 1378149 GTACGCTTAGCACGTTCACATGCTGTGCGTAGCCGGCGAACTGCTCTCTTGTTCTCAGTA 1378090 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCG 7459 ||||| ||||| || ||||| || || || || ||| || | | | ||| Sbjct 1378089 ATATCCTTCTTGTGCTTACGCTTGAATTCAGCAATGAAATGATTGACCATACGGTTATCA 1378030 Query 7460 AAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCT 7519 || || || ||||| ||||| ||||| || || || | || ||||||||||| || | Sbjct 1378029 AAGTCCTCCCCACCTAAGTGGGTATCACCAGCAGTTGACTTCACTTCAAAGATGCCATCC 1377970 Query 7520 TCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTC 7579 ||||| | | | |||||||| || || ||||| || |||||||| || || || ||| Sbjct 1377969 TCAATAGTGAGGATTGAAACATCGAAAGTGCCACCCCCAAGGTCAAAGATAAGGACATTC 1377910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634974778959360