Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq7604 158 3e-33 seq8631 149 1e-30 seq19881 123 6e-23 seq10545 123 6e-23 >seq7604 Length=1415154 Score = 158 bits (174), Expect = 3e-33 Identities = 164/214 (77%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| |||||||| ||||| || || ||||| || | || || | ||| ||||| Sbjct 1125796 ACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCTTCC 1125855 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| | | || || ||||||||||||||||||||||| || Sbjct 1125856 AGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGG 1125915 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 ||||| |||||| |||||||||||||| ||| || ||||| ||||| | ||| Sbjct 1125916 ATTTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCTACTTCTAGGGTGATGGTC 1125972 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || |||||||| ||||| || || | ||||||| Sbjct 1125973 TTGCCTGTCAAGGTTTTCACAAAGATCTGCATTT 1126006 Score = 154 bits (170), Expect = 3e-32 Identities = 162/212 (76%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| |||||||| ||||| || || ||||| || | || || | ||| ||||| Sbjct 1124656 ACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCTTCC 1124715 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| | | || || ||||||||||||||||||||||| || Sbjct 1124716 AGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGG 1124775 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 ||||| |||||| |||||||||||||| ||| || ||||| ||||| | ||| Sbjct 1124776 ATTTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCTACTTCTAGGGTGATGGTC 1124832 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||||||| ||||| || || | ||||| Sbjct 1124833 TTGCCTGTCAAGGTTTTCACAAAGATCTGCAT 1124864 Score = 154 bits (170), Expect = 3e-32 Identities = 162/212 (76%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| |||||||| ||||| || || ||||| || | || || | ||| ||||| Sbjct 1124884 ACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCTTCC 1124943 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| | | || || ||||||||||||||||||||||| || Sbjct 1124944 AGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGG 1125003 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 ||||| |||||| |||||||||||||| ||| || ||||| ||||| | ||| Sbjct 1125004 ATTTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCTACTTCTAGGGTGATGGTC 1125060 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||||||| ||||| || || | ||||| Sbjct 1125061 TTGCCTGTCAAGGTTTTCACAAAGATCTGCAT 1125092 Score = 154 bits (170), Expect = 3e-32 Identities = 162/212 (76%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| |||||||| ||||| || || ||||| || | || || | ||| ||||| Sbjct 1125112 ACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCTTCC 1125171 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| | | || || ||||||||||||||||||||||| || Sbjct 1125172 AGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGG 1125231 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 ||||| |||||| |||||||||||||| ||| || ||||| ||||| | ||| Sbjct 1125232 ATTTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCTACTTCTAGGGTGATGGTC 1125288 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||||||| ||||| || || | ||||| Sbjct 1125289 TTGCCTGTCAAGGTTTTCACAAAGATCTGCAT 1125320 Score = 154 bits (170), Expect = 3e-32 Identities = 162/212 (76%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| |||||||| ||||| || || ||||| || | || || | ||| ||||| Sbjct 1125340 ACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCTTCC 1125399 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| | | || || ||||||||||||||||||||||| || Sbjct 1125400 AGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGG 1125459 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 ||||| |||||| |||||||||||||| ||| || ||||| ||||| | ||| Sbjct 1125460 ATTTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCTACTTCTAGGGTGATGGTC 1125516 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||||||| ||||| || || | ||||| Sbjct 1125517 TTGCCTGTCAAGGTTTTCACAAAGATCTGCAT 1125548 Score = 154 bits (170), Expect = 3e-32 Identities = 162/212 (76%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| |||||||| ||||| || || ||||| || | || || | ||| ||||| Sbjct 1125568 ACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCTTCC 1125627 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| | | || || ||||||||||||||||||||||| || Sbjct 1125628 AGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGG 1125687 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 ||||| |||||| |||||||||||||| ||| || ||||| ||||| | ||| Sbjct 1125688 ATTTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCTACTTCTAGGGTGATGGTC 1125744 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||||||| ||||| || || | ||||| Sbjct 1125745 TTGCCTGTCAAGGTTTTCACAAAGATCTGCAT 1125776 Score = 149 bits (164), Expect = 1e-30 Identities = 158/207 (76%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| |||||||| ||||| || || ||||| || | || || | ||| ||||| ||||| Sbjct 1124433 GTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCTTCCAGCTG 1124492 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || ||||| | | || || ||||||||||||||||||||||| || ||||| Sbjct 1124493 CTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGGATTTT 1124552 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCC 195113 |||||| |||||||||||||| ||| || ||||| ||||| | ||||| || Sbjct 1124553 GGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCTACTTCTAGGGTGATGGTCTTGCC 1124609 Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140 |||||| ||||| || || | ||||| Sbjct 1124610 TGTCAAGGTTTTCACAAAGATCTGCAT 1124636 >seq8631 Length=204 Score = 149 bits (164), Expect = 1e-30 Identities = 158/207 (76%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| |||||||| ||||| || || ||||| || | || || | ||| ||||| ||||| Sbjct 204 GTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCTTCCAGCTG 145 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || ||||| | | || || ||||||||||||||||||||||| || ||||| Sbjct 144 CTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGGATTTT 85 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCC 195113 |||||| |||||||||||||| ||| || ||||| ||||| | ||||| || Sbjct 84 GGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCTACTTCTAGGGTGATGGTCTTGCC 28 Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140 |||||| ||||| || || | ||||| Sbjct 27 TGTCAAGGTTTTCACAAAGATCTGCAT 1 >seq19881 Length=10700766 Score = 123 bits (136), Expect = 6e-23 Identities = 163/225 (72%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || | || ||||| || || |||||||| || || || ||||| || | || || Sbjct 10193465 TCTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 10193524 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| |||||||| || || ||||| || | || ||||| || || ||||| Sbjct 10193525 GCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCC 10193584 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 ||||||||| || || || || ||||||||||||||||| ||| ||| || || Sbjct 10193585 TTCTTTGTCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTC---ACTGGGTTCAACCTC 10193641 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || |||| || || || || | ||||| Sbjct 10193642 CAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 10193686 Score = 123 bits (136), Expect = 6e-23 Identities = 163/225 (72%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || | || ||||| || || |||||||| || || || ||||| || | || || Sbjct 10194718 TCTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 10194777 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| |||||||| || || ||||| || | || ||||| || || ||||| Sbjct 10194778 GCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCC 10194837 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 ||||||||| || || || || ||||||||||||||||| ||| ||| || || Sbjct 10194838 TTCTTTGTCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTC---ACTGGGTTCAACCTC 10194894 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || |||| || || || || | ||||| Sbjct 10194895 CAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 10194939 Score = 118 bits (130), Expect = 2e-21 Identities = 162/225 (72%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || | || ||||| || || |||||||| || || || ||||| || | || || Sbjct 10194034 TCTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 10194093 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| |||||||| || || ||||| || | || ||||| || || ||||| Sbjct 10194094 GCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCC 10194153 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 ||||||||| || || || || || |||||||||||||| ||| ||||| || Sbjct 10194154 TTCTTTGTCCTGGATCTTGGCTTTCACATTCTCAATGGTGTC---ACTGGGCTCCACCTC 10194210 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || |||| || || || || | ||||| Sbjct 10194211 TAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 10194255 Score = 118 bits (130), Expect = 2e-21 Identities = 162/225 (72%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || | || ||||| || || |||||||| || || || ||||| || | || || Sbjct 10194262 TCTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 10194321 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| |||||||| || || ||||| || | || ||||| || || ||||| Sbjct 10194322 GCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCC 10194381 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 ||||||||| || || || || || |||||||||||||| ||| ||||| || Sbjct 10194382 TTCTTTGTCCTGGATCTTGGCTTTCACATTCTCAATGGTGTC---ACTGGGCTCCACCTC 10194438 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || |||| || || || || | ||||| Sbjct 10194439 TAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 10194483 Score = 118 bits (130), Expect = 2e-21 Identities = 162/225 (72%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || | || ||||| || || |||||||| || || || ||||| || | || || Sbjct 10194490 TCTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 10194549 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| |||||||| || || ||||| || | || ||||| || || ||||| Sbjct 10194550 GCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCC 10194609 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 ||||||||| || || || || || |||||||||||||| ||| ||||| || Sbjct 10194610 TTCTTTGTCCTGGATCTTGGCTTTCACATTCTCAATGGTGTC---ACTGGGCTCCACCTC 10194666 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || |||| || || || || | ||||| Sbjct 10194667 TAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 10194711 >seq10545 Length=227 Score = 123 bits (136), Expect = 6e-23 Identities = 163/225 (72%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || | || ||||| || || |||||||| || || || ||||| || | || || Sbjct 222 TCTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 163 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| |||||||| || || ||||| || | || ||||| || || ||||| Sbjct 162 GCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCC 103 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 ||||||||| || || || || ||||||||||||||||| ||| ||| || || Sbjct 102 TTCTTTGTCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTC---ACTGGGTTCAACCTC 46 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || |||| || || || || | ||||| Sbjct 45 CAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109198660002368