Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq19881 102 5e-17 seq10545 102 5e-17 seq7604 93.3 3e-14 seq8631 84.2 1e-11 >seq19881 Length=10700766 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| | || |||| |||||||| || || ||||| Sbjct 10193496 TCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAG 10193555 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | || || ||||| ||||| ||| ||| Sbjct 10193556 ATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTGTCCTGGATCTTGGCTTTCACGTTC 10193615 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| || ||||| || | ||| ||||| || || || || ||||||||| Sbjct 10193616 TCAATGGTGTCACTGGGTTCAACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACA 10193675 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 10193676 AAGATCTGCAT 10193686 Score = 102 bits (112), Expect = 5e-17 Identities = 140/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| | || |||| |||||||| || || ||||| Sbjct 10194065 TCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAG 10194124 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | || || ||||| ||||| ||| || || Sbjct 10194125 ATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTGTCCTGGATCTTGGCTTTCAC--AT 10194182 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| || ||| || || | ||| ||||| || || || || ||||||| Sbjct 10194183 TCTCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTCA 10194242 Query 34969 CAAAGATCTGCATA 34982 |||||||||||||| Sbjct 10194243 CAAAGATCTGCATA 10194256 Score = 102 bits (112), Expect = 5e-17 Identities = 140/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| | || |||| |||||||| || || ||||| Sbjct 10194293 TCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAG 10194352 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | || || ||||| ||||| ||| || || Sbjct 10194353 ATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTGTCCTGGATCTTGGCTTTCAC--AT 10194410 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| || ||| || || | ||| ||||| || || || || ||||||| Sbjct 10194411 TCTCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTCA 10194470 Query 34969 CAAAGATCTGCATA 34982 |||||||||||||| Sbjct 10194471 CAAAGATCTGCATA 10194484 Score = 102 bits (112), Expect = 5e-17 Identities = 140/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| | || |||| |||||||| || || ||||| Sbjct 10194521 TCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAG 10194580 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | || || ||||| ||||| ||| || || Sbjct 10194581 ATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTGTCCTGGATCTTGGCTTTCAC--AT 10194638 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| || ||| || || | ||| ||||| || || || || ||||||| Sbjct 10194639 TCTCAATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTCA 10194698 Query 34969 CAAAGATCTGCATA 34982 |||||||||||||| Sbjct 10194699 CAAAGATCTGCATA 10194712 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| | || |||| |||||||| || || ||||| Sbjct 10194749 TCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAG 10194808 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | || || ||||| ||||| ||| ||| Sbjct 10194809 ATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTGTCCTGGATCTTGGCTTTCACGTTC 10194868 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| || ||||| || | ||| ||||| || || || || ||||||||| Sbjct 10194869 TCAATGGTGTCACTGGGTTCAACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACA 10194928 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 10194929 AAGATCTGCAT 10194939 >seq10545 Length=227 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| | || |||| |||||||| || || ||||| Sbjct 191 TCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAG 132 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | || || ||||| ||||| ||| ||| Sbjct 131 ATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTGTCCTGGATCTTGGCTTTCACGTTC 72 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| || ||||| || | ||| ||||| || || || || ||||||||| Sbjct 71 TCAATGGTGTCACTGGGTTCAACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACA 12 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 11 AAGATCTGCAT 1 >seq7604 Length=1415154 Score = 93.3 bits (102), Expect = 3e-14 Identities = 149/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| ||||||||| ||||| ||||| || ||| | || | || ||| Sbjct 1124428 ACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCTTCC 1124487 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || | | ||||| ||| | || | || || ||||| Sbjct 1124488 AGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGG 1124547 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 || || ||||| || || || | |||| || ||| || || | ||| ||||| | Sbjct 1124548 ATTTTGGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATGGTCT 1124605 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || || | || |||||||||||||||||| Sbjct 1124606 TGCCTGTCAAGGTTTTCACAAAGATCTGCATA 1124637 Score = 89.7 bits (98), Expect = 3e-13 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| ||||||||| ||||| ||||| || ||| | || | || ||| Sbjct 1124656 ACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCTTCC 1124715 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || | | ||||| ||| | || | || || ||||| Sbjct 1124716 AGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGG 1124775 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 || || ||||| || || || | |||| || ||| || || | ||| ||||| | Sbjct 1124776 ATTTTGGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATGGTCT 1124833 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || || | || |||||||||||||||||| Sbjct 1124834 TGCCTGTCAAGGTTTTCACAAAGATCTGCATA 1124865 Score = 89.7 bits (98), Expect = 3e-13 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| ||||||||| ||||| ||||| || ||| | || | || ||| Sbjct 1124884 ACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCTTCC 1124943 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || | | ||||| ||| | || | || || ||||| Sbjct 1124944 AGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGG 1125003 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 || || ||||| || || || | |||| || ||| || || | ||| ||||| | Sbjct 1125004 ATTTTGGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATGGTCT 1125061 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || || | || |||||||||||||||||| Sbjct 1125062 TGCCTGTCAAGGTTTTCACAAAGATCTGCATA 1125093 Score = 89.7 bits (98), Expect = 3e-13 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| ||||||||| ||||| ||||| || ||| | || | || ||| Sbjct 1125112 ACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCTTCC 1125171 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || | | ||||| ||| | || | || || ||||| Sbjct 1125172 AGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGG 1125231 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 || || ||||| || || || | |||| || ||| || || | ||| ||||| | Sbjct 1125232 ATTTTGGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATGGTCT 1125289 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || || | || |||||||||||||||||| Sbjct 1125290 TGCCTGTCAAGGTTTTCACAAAGATCTGCATA 1125321 Score = 89.7 bits (98), Expect = 3e-13 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| ||||||||| ||||| ||||| || ||| | || | || ||| Sbjct 1125340 ACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCTTCC 1125399 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || | | ||||| ||| | || | || || ||||| Sbjct 1125400 AGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGG 1125459 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 || || ||||| || || || | |||| || ||| || || | ||| ||||| | Sbjct 1125460 ATTTTGGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATGGTCT 1125517 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || || | || |||||||||||||||||| Sbjct 1125518 TGCCTGTCAAGGTTTTCACAAAGATCTGCATA 1125549 Score = 89.7 bits (98), Expect = 3e-13 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| ||||||||| ||||| ||||| || ||| | || | || ||| Sbjct 1125568 ACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCTTCC 1125627 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || | | ||||| ||| | || | || || ||||| Sbjct 1125628 AGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGG 1125687 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 || || ||||| || || || | |||| || ||| || || | ||| ||||| | Sbjct 1125688 ATTTTGGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATGGTCT 1125745 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || || | || |||||||||||||||||| Sbjct 1125746 TGCCTGTCAAGGTTTTCACAAAGATCTGCATA 1125777 Score = 89.7 bits (98), Expect = 3e-13 Identities = 150/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| ||||||||| ||||| ||||| || ||| | || | || ||| Sbjct 1125796 ACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCTTCC 1125855 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || | | ||||| ||| | || | || || ||||| Sbjct 1125856 AGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGG 1125915 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 || || ||||| || || || | |||| || ||| || || | ||| ||||| | Sbjct 1125916 ATTTTGGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATGGTCT 1125973 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATATTC 34985 | || || | || ||||||||||||||||| ||| Sbjct 1125974 TGCCTGTCAAGGTTTTCACAAAGATCTGCATTTTC 1126008 >seq8631 Length=204 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/194 (70%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||||||||| ||||| ||||| || ||| | || | || |||||||| || || ||||| Sbjct 192 TTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCTTCCAGCTGCTTCCCAGCAAA 133 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | | ||||| ||| | || | || || ||||| || || ||||| | Sbjct 132 GATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTGAC--A 75 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | |||| || ||| || || | ||| ||||| || || || | || ||| Sbjct 74 TTCTCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATGGTCTTGCCTGTCAAGGTTTTC 15 Query 34968 ACAAAGATCTGCAT 34981 |||||||||||||| Sbjct 14 ACAAAGATCTGCAT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324554850381312