Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24]
19,904 sequences; 2,202,483,752 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq2194 118 9e-21
seq3754 86.0 5e-11
seq1983 86.0 5e-11
>seq2194
Length=1538764
Score = 118 bits (130), Expect = 9e-21
Identities = 112/142 (79%), Gaps = 1/142 (1%)
Strand=Plus/Plus
Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450
||||| ||||||| | || |||||||| || || |||||||| || || || || ||
Sbjct 1377646 GTTACTAATGCAGTGGTCACGGTACCAGCCTACTTCAATGACTCCCAGCGCCAGGCCACA 1377705
Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510
|||||||||||| ||||| || |||||||| || | || ||||||||||| ||||||
Sbjct 1377706 AAAGATGCTGGAACCATTGCAGGTCTTAATGTGCTCAGGATCATCAATGAACCAACTGCT 1377765
Query 550511 GCTGCACTTGCATATGGACTTG 550532
||||| |||| ||||| ||||
Sbjct 1377766 GCTGCTATTGCTTATGG-CTTG 1377786
Score = 96.9 bits (106), Expect = 3e-14
Identities = 134/186 (72%), Gaps = 4/186 (2%)
Strand=Plus/Plus
Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057
|| || ||| | || |||||||| |||||||| || | ||| |||| || || ||
Sbjct 1375942 GGAATTGATCTTGGCACCACATACTCCTGTGTTGGGGTCTTCCAACATGGCAAGGTGGAG 1376001
Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117
|| |||||||||||||| || ||||| || || ||| ||| ||| | ||||| || ||
Sbjct 1376002 ATCATTGCCAATGATCAGGGCAACAGGACCACGCCAAGTTACGTTGCCTTCACAGATACA 1376061
Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCAAG--CCACTGGTAATCCTACCAATACTA 550175
|| || | |||||||| ||||| | |||| || || ||||||||||| ||
Sbjct 1376062 GAGAGGTTGATCGGTGATGCTGCAAAGAACCAAGTTGCAATG--AATCCTACCAACACGG 1376119
Query 550176 TTTTTG 550181
||||||
Sbjct 1376120 TTTTTG 1376125
>seq3754
Length=10286911
Score = 86.0 bits (94), Expect = 5e-11
Identities = 68/82 (83%), Gaps = 0/82 (0%)
Strand=Plus/Minus
Query 563292 AATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCT 563351
||||||||| |||| || || | | |||||| | ||||| || ||||||||||||||
Sbjct 5439579 AATATTGTAGTCAGACAGCGTCCGTCCATCTTCCAACTGTTTGCCAGCAAAAATAAGTCT 5439520
Query 563352 TTGCTGATCAGGAGGAATTCCT 563373
||| ||||||||||||||||||
Sbjct 5439519 TTGTTGATCAGGAGGAATTCCT 5439498
>seq1983
Length=5664830
Score = 86.0 bits (94), Expect = 5e-11
Identities = 77/97 (79%), Gaps = 0/97 (0%)
Strand=Plus/Minus
Query 550441 TCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGA 550500
||| ||||||||||||||||| | ||| ||||||| |||||||| | | || |||||
Sbjct 4853528 TCAGGCTACTAAAGATGCTGGGCAGATTTCTGGACTCAATGTTCTGAGGGTGATTAATGA 4853469
Query 550501 ACCTACTGCTGCTGCACTTGCATATGGACTTGATAAA 550537
||| ||||||||||| || || || || || || |||
Sbjct 4853468 ACCAACTGCTGCTGCCCTGGCTTACGGGCTAGACAAA 4853432
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4028243386712960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |