Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq2194 118 9e-21 seq3754 86.0 5e-11 seq1983 86.0 5e-11 >seq2194 Length=1538764 Score = 118 bits (130), Expect = 9e-21 Identities = 112/142 (79%), Gaps = 1/142 (1%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| ||||||| | || |||||||| || || |||||||| || || || || || Sbjct 1377646 GTTACTAATGCAGTGGTCACGGTACCAGCCTACTTCAATGACTCCCAGCGCCAGGCCACA 1377705 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||||||| ||||| || |||||||| || | || ||||||||||| |||||| Sbjct 1377706 AAAGATGCTGGAACCATTGCAGGTCTTAATGTGCTCAGGATCATCAATGAACCAACTGCT 1377765 Query 550511 GCTGCACTTGCATATGGACTTG 550532 ||||| |||| ||||| |||| Sbjct 1377766 GCTGCTATTGCTTATGG-CTTG 1377786 Score = 96.9 bits (106), Expect = 3e-14 Identities = 134/186 (72%), Gaps = 4/186 (2%) Strand=Plus/Plus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 || || ||| | || |||||||| |||||||| || | ||| |||| || || || Sbjct 1375942 GGAATTGATCTTGGCACCACATACTCCTGTGTTGGGGTCTTCCAACATGGCAAGGTGGAG 1376001 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 || |||||||||||||| || ||||| || || ||| ||| ||| | ||||| || || Sbjct 1376002 ATCATTGCCAATGATCAGGGCAACAGGACCACGCCAAGTTACGTTGCCTTCACAGATACA 1376061 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCAAG--CCACTGGTAATCCTACCAATACTA 550175 || || | |||||||| ||||| | |||| || || ||||||||||| || Sbjct 1376062 GAGAGGTTGATCGGTGATGCTGCAAAGAACCAAGTTGCAATG--AATCCTACCAACACGG 1376119 Query 550176 TTTTTG 550181 |||||| Sbjct 1376120 TTTTTG 1376125 >seq3754 Length=10286911 Score = 86.0 bits (94), Expect = 5e-11 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 563292 AATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCT 563351 ||||||||| |||| || || | | |||||| | ||||| || |||||||||||||| Sbjct 5439579 AATATTGTAGTCAGACAGCGTCCGTCCATCTTCCAACTGTTTGCCAGCAAAAATAAGTCT 5439520 Query 563352 TTGCTGATCAGGAGGAATTCCT 563373 ||| |||||||||||||||||| Sbjct 5439519 TTGTTGATCAGGAGGAATTCCT 5439498 >seq1983 Length=5664830 Score = 86.0 bits (94), Expect = 5e-11 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 550441 TCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGA 550500 ||| ||||||||||||||||| | ||| ||||||| |||||||| | | || ||||| Sbjct 4853528 TCAGGCTACTAAAGATGCTGGGCAGATTTCTGGACTCAATGTTCTGAGGGTGATTAATGA 4853469 Query 550501 ACCTACTGCTGCTGCACTTGCATATGGACTTGATAAA 550537 ||| ||||||||||| || || || || || || ||| Sbjct 4853468 ACCAACTGCTGCTGCCCTGGCTTACGGGCTAGACAAA 4853432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028243386712960