Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq19887 86.0 5e-12 seq4337 84.2 2e-11 >seq19887 Length=6038298 Score = 86.0 bits (94), Expect = 5e-12 Identities = 124/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 30143 CTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTC 30202 |||| |||| || |||| || || || || || ||||||||||| || || || |||| Sbjct 4360250 CTGCATTCATATCTTTGTATTCAGCCCCAAAGTGTCTCCACTGGAAACCATATACTGGTC 4360309 Query 30203 CCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGT 30262 ||| || || || || || | ||| || || ||||| ||||| | || || | Sbjct 4360310 CCAAATCCCCTTCCTCTCTCTTACTGAAACCTTGTTTATCCAAGAAGTCACGTGATCCAT 4360369 Query 30263 TGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 |||| ||||| ||||| || || || | ||||||||||| | ||||| || || Sbjct 4360370 TGGCATCCCAAATCTTCACTCCTTTTGCAGAGAGCTCTTTAGCATTTGTTGAACC 4360424 >seq4337 Length=10356891 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || ||||| || || || |||| || || || ||| | | ||| | |||||| || || Sbjct 7180878 TTGAGCTCTCTACTAAGCACTATATTAATTCTATCTTTTAAAGGGCGATTCTTCTCAGGA 7180937 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCTCTG 112212 || |||||||||||| | ||||||||||||| ||| ||||| || ||| || Sbjct 7180938 ATCGAGAACCAAGTCCTCCTACCCATTATCAACACATTCTGTTTACCTGTG 7180988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408518477542592