Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24]
19,904 sequences; 2,202,483,752 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq774 172 1e-37
seq3620 105 1e-17
>seq774
Length=704928
Score = 172 bits (190), Expect = 1e-37
Identities = 181/238 (76%), Gaps = 0/238 (0%)
Strand=Plus/Minus
Query 241389 GCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCC 241448
|||| ||||| | | || ||| || ||| | ||| ||||| ||||||||||||||||
Sbjct 267015 GCTGGCAGCCATTGTTCACGTGGTTCATGACTTTCTGCTTGAGCTGGGCCACCTGGTCCC 266956
Query 241449 GCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCT 241508
|||| ||| || || ||||||||||| ||||| || | || ||| ||| ||||| |
Sbjct 266955 GCAGGACGCTGGCTGTGTTGGACAGTCCCGCGTTCTCCGTTTTCAGCGTCTTGACTTTGT 266896
Query 241509 CCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGT 241568
|||||||||| || || || ||||| || | | ||||| |||||||| |||| ||||
Sbjct 266895 CCTCCAGCCGGGCTATCCGCTCCAGCTTCCTCTTCCGGCACTTGGTGGCCGCCAGCCGGT 266836
Query 241569 TCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGA 241626
|||| || | ||| | ||| ||||||| || |||||||| ||||||| ||| || ||
Sbjct 266835 TCCGCAGCCGCTTCCTCTCCACCTTGATCCGCTCCTGGTCTTCCATGTTGATGGGCGA 266778
>seq3620
Length=164711
Score = 105 bits (116), Expect = 1e-17
Identities = 109/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 213821 CATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCAC 213880
|||||| || || || | ||| || || |||||||||||||| | | ||| |||
Sbjct 110966 CATGAAGAGATCAGGAATCCAGAGGGCAAAGAACAGGTCCCTGGCTCGCTGCTCCTCCTT 111025
Query 213881 TCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTA 213940
|||| ||| || ||| || ||||| |||||||||||| ||||||||||||| |||
Sbjct 111026 CCCAGTGTTCTTCTTCAGGTCAAGAAACTCAAAGATGTCCAAATGCCACGGCTCCAGGTA 111085
Query 213941 GATGGCAAAGGCGCCCGGCCTCT 213963
|||||||||||| || || ||||
Sbjct 111086 GATGGCAAAGGCCCCAGGTCTCT 111108
Score = 89.7 bits (98), Expect = 1e-12
Identities = 117/162 (72%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587
|||||||||| || || ||||||||||||||||| |||||| ||||||||||| |||
Sbjct 109505 GTGTACTCCACTATTTCTGTGCACAGGTTGCTGCACTTGATGGTTCCCAGGTTCTGCTGG 109564
Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647
|| ||| || ||| |||||||| | |||||| || | || ||||| |||
Sbjct 109565 TTGCTCTTCCTATTACAAGAGTCCTTGTACAACATGTAAGGAGTTCCTGTCTCGGTCTGA 109624
Query 213648 GACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACC 213689
||| | | || | |||||| | | |||||| ||||||
Sbjct 109625 GACTCTATGATGGCGTACCAGAGCTGCTGGGCCTTCACCACC 109666
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931301034639360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |