Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq774 172 1e-37 seq3620 105 1e-17 >seq774 Length=704928 Score = 172 bits (190), Expect = 1e-37 Identities = 181/238 (76%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 241389 GCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCC 241448 |||| ||||| | | || ||| || ||| | ||| ||||| |||||||||||||||| Sbjct 267015 GCTGGCAGCCATTGTTCACGTGGTTCATGACTTTCTGCTTGAGCTGGGCCACCTGGTCCC 266956 Query 241449 GCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCT 241508 |||| ||| || || ||||||||||| ||||| || | || ||| ||| ||||| | Sbjct 266955 GCAGGACGCTGGCTGTGTTGGACAGTCCCGCGTTCTCCGTTTTCAGCGTCTTGACTTTGT 266896 Query 241509 CCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGT 241568 |||||||||| || || || ||||| || | | ||||| |||||||| |||| |||| Sbjct 266895 CCTCCAGCCGGGCTATCCGCTCCAGCTTCCTCTTCCGGCACTTGGTGGCCGCCAGCCGGT 266836 Query 241569 TCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGA 241626 |||| || | ||| | ||| ||||||| || |||||||| ||||||| ||| || || Sbjct 266835 TCCGCAGCCGCTTCCTCTCCACCTTGATCCGCTCCTGGTCTTCCATGTTGATGGGCGA 266778 >seq3620 Length=164711 Score = 105 bits (116), Expect = 1e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 213821 CATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCAC 213880 |||||| || || || | ||| || || |||||||||||||| | | ||| ||| Sbjct 110966 CATGAAGAGATCAGGAATCCAGAGGGCAAAGAACAGGTCCCTGGCTCGCTGCTCCTCCTT 111025 Query 213881 TCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTA 213940 |||| ||| || ||| || ||||| |||||||||||| ||||||||||||| ||| Sbjct 111026 CCCAGTGTTCTTCTTCAGGTCAAGAAACTCAAAGATGTCCAAATGCCACGGCTCCAGGTA 111085 Query 213941 GATGGCAAAGGCGCCCGGCCTCT 213963 |||||||||||| || || |||| Sbjct 111086 GATGGCAAAGGCCCCAGGTCTCT 111108 Score = 89.7 bits (98), Expect = 1e-12 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||||| || || ||||||||||||||||| |||||| ||||||||||| ||| Sbjct 109505 GTGTACTCCACTATTTCTGTGCACAGGTTGCTGCACTTGATGGTTCCCAGGTTCTGCTGG 109564 Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647 || ||| || ||| |||||||| | |||||| || | || ||||| ||| Sbjct 109565 TTGCTCTTCCTATTACAAGAGTCCTTGTACAACATGTAAGGAGTTCCTGTCTCGGTCTGA 109624 Query 213648 GACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACC 213689 ||| | | || | |||||| | | |||||| |||||| Sbjct 109625 GACTCTATGATGGCGTACCAGAGCTGCTGGGCCTTCACCACC 109666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931301034639360