Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq2194 127 1e-23 >seq2194 Length=1538764 Score = 127 bits (140), Expect = 1e-23 Identities = 226/327 (69%), Gaps = 2/327 (1%) Strand=Plus/Plus Query 475496 ACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTT 475555 || || ||||||||||||||||| |||| |||||| ||||| | | | ||||| || Sbjct 1378124 ACAGCATGTGAACGTGCTAAGCGTACTCTCTCTTCTAGCACTCAGGCCAGTATTGAAATT 1378183 Query 475556 GATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGAT 475615 || || || | ||| || ||||||| | | || ||||| || ||| |||||||| Sbjct 1378184 GACTCGCTCTATGAGGGCATTGATTTTTACACCTCAATTACCAGAGCTCGTTTTGAAGAG 1378243 Query 475616 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCT 475675 | | ||||||| || | || | || || || || | | || | ||| | Sbjct 1378244 TTAAATGCTGATCTGTTCCGTGGCACTCTGGATCCTGTGGAGAAGGCCCTGCGGGATGCC 1378303 Query 475676 AAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCA 475735 ||||| ||||||||||| ||||||| ||||| || || || || ||||| | ||||| Sbjct 1378304 AAACTAGACAAATCACAGATCCATGACATTGTACTGGTTGGTGGATCAACCCGTATTCCC 1378363 Query 475736 AAAATAAGAGAAATGCTTTCATCATAT-TTTAATGGTAAAAAGTTAAATGAAAGTGTAAA 475794 || || ||||| | | || || | || ||||| ||| || | || | || | || Sbjct 1378364 AAGAT-TCAGAAACTCCTGCAGGATTTCTTCAATGGGAAAGAGCTGAACAAGAGCATCAA 1378422 Query 475795 TCCTGATGAAGCTGTTGCATATGGAGC 475821 ||||||||||||||| || || || || Sbjct 1378423 TCCTGATGAAGCTGTGGCTTACGGTGC 1378449 Score = 107 bits (118), Expect = 1e-17 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 474728 GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACT 474787 || ||| ||||||| | || || ||||| || || ||||| || || || || || || Sbjct 1377646 GTTACTAATGCAGTGGTCACGGTACCAGCCTACTTCAATGACTCCCAGCGCCAGGCCACA 1377705 Query 474788 AAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCA 474847 |||||||| |||| ||||||||||||||||| | | || || ||||||||||| || Sbjct 1377706 AAAGATGCTGGAACCATTGCAGGTCTTAATGTGCTCAGGATCATCAATGAACCAACTGCT 1377765 Query 474848 GCCGCACTTGCTTATGGTCTTGATAAGAA 474876 || || |||||||||| | || ||||| Sbjct 1377766 GCTGCTATTGCTTATGGCTTGGACAAGAA 1377794 Score = 93.3 bits (102), Expect = 3e-13 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 || |||||||| ||||| ||||| || |||||||||||||| || |||||||||||||| Sbjct 1379509 GGCATTCCTCCAGCTCCAAGAGGTGTACCTCAAATTGAAGTAACATTTGATATTGATGCC 1379568 Query 476150 AATGGTATTCTTAATGTTACTGCT 476173 ||||| || || ||||| ||||| Sbjct 1379569 AATGGCATCCTGAATGTGTCTGCT 1379592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267325420865792