Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq19868 203 4e-47 seq8015 150 2e-31 >seq19868 Length=9953378 Score = 203 bits (224), Expect = 4e-47 Identities = 647/993 (65%), Gaps = 13/993 (1%) Strand=Plus/Plus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 |||||| || || ||| |||| || || | || || |||||| || || |||| Sbjct 26246 TGTGTCTCAAATATTCTTCCAAGCACTGAATTGCAAAGGGGTCAACATCAGTATCAAATT 26305 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 | || || || | ||||| ||||||| ||||||| || |||||| || || | Sbjct 26306 TGTTAGCAAATAAGTGGTGT---TTCTGTAACATCCAGTTCAAGTCTCCCACTCCAAATA 26362 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 | || || ||||| | || | || ||||| || || || | || ||||| | ||| | Sbjct 26363 CACACACAGAACGCACATGAATTCCATTGCACGGAGGATAGGGGGCACCTTTTGACACAT 26422 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 | || || | || ||||||||||||||||| || | || | |||||| || | || | Sbjct 26423 CCCCCTCAAAATAATGCCACTTCACAAACCTCGCAAGAGCATTCATGTCAGAAATATCAT 26482 Query 160285 ATTTGTACATCAGG--GGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCA 160342 | |||| || | || | |||||| || ||||| | || || | || | || ||||| Sbjct 26483 ACTTGT-CA-CTGGAAGAAACGGCCCCTGGAACTTCAGGGATTCTTTGAATAGTAGCCCA 26540 Query 160343 CAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCT 160402 || || ||| |||||||| || || || |||| |||||| || ||||| |||| || Sbjct 26541 CAAGTATTCATCGGGGCTATATGTATCTTTAGCCCATTCAATAAACTCAAGGATTTTGCT 26600 Query 160403 GTCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAA 160462 || || || | || | || | | ||||| || || ||||| ||||| Sbjct 26601 GTTTTCTAGCACATACTCTACAAATCTCCTACTAGCAACAAAATAGGCACTGCCAGAGAA 26660 Query 160463 TATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTT 160522 | ||| | | ||| || | | |||||| || |||| | || | Sbjct 26661 AACAGGTGTACTGAGAGGTGGAGGTTGTTTGTCTATTCCCATGTTCTTTAGTTTACCATC 26720 Query 160523 CACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGC--GGTGGCATGCGTTCCGTC 160580 || | | | | || ||||| | | |||| ||| | ||||| || || Sbjct 26721 AACAATTTCATAGTGTTTTTTCCATC-GTATTTCTT-TGCTGGAAGGCATTTTCTCAGTT 26778 Query 160581 TCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTG 160640 |||| ||||| |||| | || | ||||| | || || || || |||| ||||| Sbjct 26779 TCTAAGCTGTTTTCACCCTTTAGGGCTTTCAATTTCTCCACAATTTCCTGGTTGGTCTTA 26838 Query 160641 AGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGC 160700 | |||||||| |||| || || ||||||| || ||||| ||| || || Sbjct 26839 ATGGGAAAGTCCATACCACATAAATTTATCAAATATTTCCAGTTCATACTTCTTCTGTAG 26898 Query 160701 AGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTC 160760 || || ||||||| || | || ||||| || | |||||| ||||| |||||||| | Sbjct 26899 AGATCTTTCATGCAGTTGAGGTCGGCCTGTACCCTGCTCCATGAAGCATACACTACACTT 26958 Query 160761 TCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGA 160820 || | || ||||| | |||||| ||| |||||| ||||| |||||| || | ||| Sbjct 26959 TCCAATTGGCTGGCAATAAAGACATTACTGAAACAGGACACAATTCCCTTAACTG-CAGC 27017 Query 160821 AAGAACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTA 160879 |||| | || | | |||| ||| || || | ||| || |||||||| || || Sbjct 27018 CAGAAAAGATTCTGGAGACTTTTTGTCAACATGAATGCAGTAATAATTCTGAGGTGCATA 27077 Query 160880 GATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGC 160939 ||| | || || | || || | ||| ||||| || |||| || || || || ||||| Sbjct 27078 GATTGATCTTAGAAGTCTATCAAGCATGTCTATTTTGTGATATATGACTATTGAATAGGC 27137 Query 160940 TATCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGAT 160999 || ||||| || | ||||| ||| || | | | | ||||| ||| | ||| | Sbjct 27138 AATTGGAAATTCAGCTTCCTCTTTACTGAGAGGTTCCATAATATACTTCCGCATTTTGGT 27197 Query 161000 AAAATAATCACAATCCCGCGTCATGTTGATATA 161032 |||| | |||||||| ||||| || ||||| Sbjct 27198 AAAAGAGGCACAATCCATTGTCATATTAATATA 27230 >seq8015 Length=4129873 Score = 150 bits (166), Expect = 2e-31 Identities = 247/355 (70%), Gaps = 6/355 (2%) Strand=Plus/Plus Query 160620 ACGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTC 160679 |||||||| ||| |||||||| || |||||||| ||||| ||| | | ||| | Sbjct 1371345 ACGATCTCGGCGTTGGTCTTGAGGGGGAAGTCGGTGCCGCAGGTGTTGAGGAGGTAGCGC 1371404 Query 160680 CATTTCGCG---CTCAGGTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGG 160736 || | || ||| || |||| ||| |||||| || | || |||||||| | | Sbjct 1371405 CAGGGCACGGGGCTCCGGA---GCAGCTCCTCCATGCAGTTCAGGTCCGCCTGCACCCTG 1371461 Query 160737 CTCCAGGAAGCGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACAC 160796 |||||| |||||||| || ||| | ||||||| ||||||||| | ||| || Sbjct 1371462 GCCCAGGACGCGTACACCACTCGCTCCGTCCTGCTGGCCAAAAAGACGTTGTGGAAGCAG 1371521 Query 160797 GACACGATTCCCACCACCGCCAGAAAGAACATCTTATCCGCCTTTCGGTCCACGTGCACG 160856 || |||| | | ||| ||| |||| | | ||| |||||||||| ||| Sbjct 1371522 GAGGCGATGCGCCGCACGGCCTCCCTGAACTCGTCGGGGGACTTGAGGTCCACGTGGACG 1371581 Query 160857 CAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTA 160916 || || | |||||| ||||||||||||| | |||| ||||||||||||||| | ||| Sbjct 1371582 CAGTAGATGTTCTGGGGCGCGTAGATGGAGCGCAGCAGCCTCTCGAACATCTCGACCTTG 1371641 Query 160917 TGATGGATCACGATAGAGTAGGCTATCGGAAACTCGGTCTCCTCGCGACTCAGGG 160971 | || | ||| || |||||||| ||||| || || |||||| | ||||||| Sbjct 1371642 TCGTGCACCACCATGGAGTAGGCGATCGGGAAATCCTCCTCCTCCTGGCTCAGGG 1371696 Score = 95.1 bits (104), Expect = 1e-14 Identities = 209/313 (67%), Gaps = 3/313 (1%) Strand=Plus/Plus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 |||| |||||||| || ||||| || |||| ||| | || || ||| || | Sbjct 1370803 TGTGCCGCAGATGCTCCTCCAGGCACTGGATTGCGCTGTCATCGACACTGGGGTCAAACT 1370862 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 | || |||| ||| || || | |||| || |||||||| | ||| || |||| ||| Sbjct 1370863 TGTTGGCGAGCAGGTGATGGG---TCTGCAGCATCCAGTGGAGGTCCCCCACCCCGTACA 1370919 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 | ||||||| || ||| | || |||| |||||||| | || || | || | Sbjct 1370920 CACAGACGGCGCGCCGGTGGGCCCCCGTGCAGGGCGGGTAGGGTGCCCCCCTGCTGACAT 1370979 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 | || || ||| | ||||||||| | ||||| | || | | ||||| || | Sbjct 1370980 CCCCCTCCAGGTATTCCCACTTCACCAGTCTGGCCACGGCGTTGACATCGGACACCTCAT 1371039 Query 160285 ATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACA 160344 | |||| | ||| |||| || || | ||| ||||| || || ||||||||||||| Sbjct 1371040 ACTTGTCGTTGTAGGGGACGGAGCCCGGCATGCCCGGCATGCGGTGCAGGGTGGCCCACA 1371099 Query 160345 GGTGTTCGTCGGG 160357 ||| |||||||| Sbjct 1371100 CGTGCTCGTCGGG 1371112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577075587863040