Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq7604 98.7 2e-15 seq19881 95.1 2e-14 seq8631 87.8 4e-12 seq10545 86.0 1e-11 >seq7604 Length=1415154 Score = 98.7 bits (108), Expect = 2e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 192308 TACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAG 192367 ||||||| | || |||| || || || | ||| | ||||| ||| || || || | Sbjct 1124408 TACCACCCCGGAGGCGTAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCTG 1124467 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | | || || | || |||| || || ||||||||||| || ||||| ||||| || | Sbjct 1124468 ACAGGGTGCGCCCGTCTTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGAG 1124527 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | || |||||||| || || ||||| || ||||| || | || | |||| Sbjct 1124528 GAATGCCTTCTTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTA 1124587 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||| || ||||| || || || || ||||| | ||| |||||||| Sbjct 1124588 CTTCTAGGGTGATGGTCTTGCCTGTCAAGGTTTTCACAAAGATCTGCAT 1124636 Score = 98.7 bits (108), Expect = 2e-15 Identities = 169/244 (69%), Gaps = 1/244 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | || || | || | || | ||| | ||||| ||| || || || Sbjct 1125775 ATACCACCCCGGAGGCGCAGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCT 1125834 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || | || |||| || || ||||||||||| || ||||| ||||| || Sbjct 1125835 GACAGGGTGCGCCCGTCTTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGA 1125894 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| || || ||||| || ||||| || | || | ||| Sbjct 1125895 GGAATGCCTTCTTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCT 1125954 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTAT-TAGA 192545 |||||||| || ||||| || || || || ||||| | ||| ||||||||||| | || | Sbjct 1125955 ACTTCTAGGGTGATGGTCTTGCCTGTCAAGGTTTTCACAAAGATCTGCATTTTCTCTATA 1126014 Query 192546 AAAA 192549 |||| Sbjct 1126015 AAAA 1126018 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | || || | || | || | ||| | ||||| ||| || || || Sbjct 1124635 ATACCACCCCGGAGGCGCAGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCT 1124694 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || | || |||| || || ||||||||||| || ||||| ||||| || Sbjct 1124695 GACAGGGTGCGCCCGTCTTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGA 1124754 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| || || ||||| || ||||| || | || | ||| Sbjct 1124755 GGAATGCCTTCTTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCT 1124814 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||||||| || ||||| || || || || ||||| | ||| |||||||| Sbjct 1124815 ACTTCTAGGGTGATGGTCTTGCCTGTCAAGGTTTTCACAAAGATCTGCAT 1124864 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | || || | || | || | ||| | ||||| ||| || || || Sbjct 1124863 ATACCACCCCGGAGGCGCAGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCT 1124922 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || | || |||| || || ||||||||||| || ||||| ||||| || Sbjct 1124923 GACAGGGTGCGCCCGTCTTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGA 1124982 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| || || ||||| || ||||| || | || | ||| Sbjct 1124983 GGAATGCCTTCTTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCT 1125042 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||||||| || ||||| || || || || ||||| | ||| |||||||| Sbjct 1125043 ACTTCTAGGGTGATGGTCTTGCCTGTCAAGGTTTTCACAAAGATCTGCAT 1125092 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | || || | || | || | ||| | ||||| ||| || || || Sbjct 1125091 ATACCACCCCGGAGGCGCAGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCT 1125150 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || | || |||| || || ||||||||||| || ||||| ||||| || Sbjct 1125151 GACAGGGTGCGCCCGTCTTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGA 1125210 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| || || ||||| || ||||| || | || | ||| Sbjct 1125211 GGAATGCCTTCTTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCT 1125270 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||||||| || ||||| || || || || ||||| | ||| |||||||| Sbjct 1125271 ACTTCTAGGGTGATGGTCTTGCCTGTCAAGGTTTTCACAAAGATCTGCAT 1125320 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | || || | || | || | ||| | ||||| ||| || || || Sbjct 1125319 ATACCACCCCGGAGGCGCAGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCT 1125378 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || | || |||| || || ||||||||||| || ||||| ||||| || Sbjct 1125379 GACAGGGTGCGCCCGTCTTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGA 1125438 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| || || ||||| || ||||| || | || | ||| Sbjct 1125439 GGAATGCCTTCTTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCT 1125498 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||||||| || ||||| || || || || ||||| | ||| |||||||| Sbjct 1125499 ACTTCTAGGGTGATGGTCTTGCCTGTCAAGGTTTTCACAAAGATCTGCAT 1125548 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | || || | || | || | ||| | ||||| ||| || || || Sbjct 1125547 ATACCACCCCGGAGGCGCAGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCT 1125606 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || | || |||| || || ||||||||||| || ||||| ||||| || Sbjct 1125607 GACAGGGTGCGCCCGTCTTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGA 1125666 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| || || ||||| || ||||| || | || | ||| Sbjct 1125667 GGAATGCCTTCTTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCT 1125726 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||||||| || ||||| || || || || ||||| | ||| |||||||| Sbjct 1125727 ACTTCTAGGGTGATGGTCTTGCCTGTCAAGGTTTTCACAAAGATCTGCAT 1125776 >seq19881 Length=10700766 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| ||||| | || | ||| | || | ||| || ||| || || ||| Sbjct 10194026 ATACCACCTCTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA 10194085 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| |||| || || ||||||||||| | ||||| || ||||| Sbjct 10194086 GACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGG 10194145 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| || || || || ||| ||||| || | || | || Sbjct 10194146 GGGATGCCTTCTTTGTCCTGGATCTTGGCTTTCACATTCTCAATGGTGTCACTGGGCTCC 10194205 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||| || ||||| || ||||| | || || | ||| |||||||| Sbjct 10194206 ACCTCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 10194255 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| ||||| | || | ||| | || | ||| || ||| || || ||| Sbjct 10194254 ATACCACCTCTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA 10194313 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| |||| || || ||||||||||| | ||||| || ||||| Sbjct 10194314 GACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGG 10194373 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| || || || || ||| ||||| || | || | || Sbjct 10194374 GGGATGCCTTCTTTGTCCTGGATCTTGGCTTTCACATTCTCAATGGTGTCACTGGGCTCC 10194433 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||| || ||||| || ||||| | || || | ||| |||||||| Sbjct 10194434 ACCTCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 10194483 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| ||||| | || | ||| | || | ||| || ||| || || ||| Sbjct 10194482 ATACCACCTCTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA 10194541 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| |||| || || ||||||||||| | ||||| || ||||| Sbjct 10194542 GACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGG 10194601 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| || || || || ||| ||||| || | || | || Sbjct 10194602 GGGATGCCTTCTTTGTCCTGGATCTTGGCTTTCACATTCTCAATGGTGTCACTGGGCTCC 10194661 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||| || ||||| || ||||| | || || | ||| |||||||| Sbjct 10194662 ACCTCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 10194711 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| ||||| | || | ||| | || | ||| || ||| || || ||| Sbjct 10194710 ATACCACCTCTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA 10194769 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| |||| || || ||||||||||| | ||||| || ||||| Sbjct 10194770 GACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGG 10194829 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| || || || || ||| || || || | || | ||| Sbjct 10194830 GGGATGCCTTCTTTGTCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTCACTGGGTTCA 10194889 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| || ||||| | || || | ||| |||||||| Sbjct 10194890 ACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 10194939 Score = 86.0 bits (94), Expect = 1e-11 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 |||||||| ||||| | || | ||| | || | ||| || ||| || || ||||| Sbjct 10193460 CCACCTCTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 10193519 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | || || |||| |||| || || ||||||||||| | ||||| || ||||| || Sbjct 10193520 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 10193579 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || |||||||| || || || || ||| || || || | || | ||| || Sbjct 10193580 ATGCCTTCTTTGTCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTCACTGGGTTCAACC 10193639 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || ||||| || ||||| | || || | ||| |||||||| Sbjct 10193640 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 10193686 >seq8631 Length=204 Score = 87.8 bits (96), Expect = 4e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 192346 TCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAG 192405 ||||| ||| || || || || | || || | || |||| || || ||||||||| Sbjct 191 TCTTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCTTCCAGCTGCTTCCCAGCAAAG 132 Query 192406 ATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTA 192465 || || ||||| ||||| || || || |||||||| || || ||||| || ||||| Sbjct 131 ATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTGACATTC 72 Query 192466 GTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATA 192525 || | || | ||||||||||| || ||||| || || || || ||||| | | Sbjct 71 TCAATGGTGTCACTGGGCTCTACTTCTAGGGTGATGGTCTTGCCTGTCAAGGTTTTCACA 12 Query 192526 AATATCTGCAT 192536 || |||||||| Sbjct 11 AAGATCTGCAT 1 >seq10545 Length=227 Score = 86.0 bits (94), Expect = 1e-11 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 |||||||| ||||| | || | ||| | || | ||| || ||| || || ||||| Sbjct 227 CCACCTCTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 168 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | || || |||| |||| || || ||||||||||| | ||||| || ||||| || Sbjct 167 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 108 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || |||||||| || || || || ||| || || || | || | ||| || Sbjct 107 ATGCCTTCTTTGTCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTCACTGGGTTCAACC 48 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || ||||| || ||||| | || || | ||| |||||||| Sbjct 47 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984228937910400