Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq5530 143 3e-28 seq7826 93.3 5e-13 >seq5530 Length=105988 Score = 143 bits (158), Expect = 3e-28 Identities = 153/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||||||| ||| ||| | ||| |||||||||||||||||||| || | | || Sbjct 18572 GCTTGGCCAGTTCCCCGGGCAGCAGCAGCCGCACGGCGGTCTGGATCTCCCGGGAGGTGA 18631 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| ||||||| || ||| || || | ||||| |||| | Sbjct 18632 TGGTCGAGCGCTTGTTGTAGTGCGCTAGGCGGGACGCTTCCCCAGCAATGCGCTCGAAGA 18691 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| |||||||||||||||| ||| | ||| ||| || || |||||||| Sbjct 18692 TGTCGTTCACAAACGAGTTCATGATGCCCATGGCCTTAGAGGAAATACCGGTGTCGGGGT 18751 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 18752 GCACCTGCTTCAGCACCTTGTA 18773 Score = 131 bits (144), Expect = 2e-24 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 ||||| || || ||| | ||| |||||||||||||||||||| || | | ||| || Sbjct 27629 GCCAGCTCCCCAGGCAGCAGCAGCCGCACGGCGGTCTGGATCTCCCGGGAGGTGATGGTC 27688 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 ||||||||| ||||||| || ||| || || | ||||| |||| |||||| Sbjct 27689 GAGCGCTTGTTGTAGTGCGCTAGGCGGGACGCTTCCCCAGCAATGCGCTCGAAGATGTCG 27748 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 || |||||||||||||||| ||| | ||| ||| || || ||||||||||||| Sbjct 27749 TTCACAAACGAGTTCATGATGCCCATGGCCTTAGAGGAAATACCGGTGTCGGGGTGCACC 27808 Query 1254528 TGCTTGAGCACCTTGTA 1254544 ||||| ||||||||||| Sbjct 27809 TGCTTCAGCACCTTGTA 27825 Score = 125 bits (138), Expect = 9e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 ||||| || || ||| | ||| |||||||||||||||||||| || | | ||| || Sbjct 73499 GCCAGCTCCCCAGGCAGCAGCAGCCGCACGGCGGTCTGGATCTCCCGGGAGGTGATGGTC 73440 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 ||| ||||| |||||||||| ||| ||||| | ||||| |||| ||||| Sbjct 73439 GAGCGTTTGTTGTAGTGCGCCAGGCGGGACGCCTCCCCAGCAATGCGCTCGAAGATGTCA 73380 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 ||||| || |||||||||| ||| | ||| ||| || || ||||||||||||| Sbjct 73379 TTGACGAAGGAGTTCATGATGCCCATGGCCTTAGAGGAAATACCGGTGTCGGGGTGCACC 73320 Query 1254528 TGCTTGAGCACCTTGTA 1254544 ||||| ||||||||||| Sbjct 73319 TGCTTCAGCACCTTGTA 73303 Score = 122 bits (134), Expect = 1e-21 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 ||||| || || ||| | ||||||||| |||||||||||||| || | | ||| || Sbjct 81429 GCCAGCTCTCCAGGCAGCAGCAGGCGCACAGCGGTCTGGATCTCCCGGGAGGTGATGGTC 81370 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 ||||||||| ||||||| || ||| || || | ||||| |||| |||||| Sbjct 81369 GAGCGCTTGTTGTAGTGCGCTAGGCGGGACGCTTCCCCAGCAATGCGCTCGAAGATGTCG 81310 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 || |||||||||||||||| ||| | ||| ||| || || ||| ||||| ||| Sbjct 81309 TTCACAAACGAGTTCATGATGCCCATGGCCTTAGAGGAAATACCGGTGTCAGGGTGAACC 81250 Query 1254528 TGCTTGAGCACCTTGTA 1254544 ||||| ||||||||||| Sbjct 81249 TGCTTCAGCACCTTGTA 81233 >seq7826 Length=213159 Score = 93.3 bits (102), Expect = 5e-13 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| || ||| ||| | ||||||||||||||||||||| || |||| | || Sbjct 173309 GCTTGGCCAACTCCCCGGGCAGCAGCAGGCGCACGGCGGTCTGGATTTCTCGCGAACTGA 173368 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || |||||||| | |||| || ||||||| | ||||| |||| | Sbjct 173369 TGGTCGATCGCTTGTTGTACAAAGCCAAGCGTGACGCCTCGGCAGCAATGCGCTCGAAGA 173428 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||| | || || || ||||||| ||| | ||| || || ||| ||| || | Sbjct 173429 GATCGCTCACGAAAGAATTCATGATGCTCATGGCCTTAGAAGAAATACCCGTGTCTGGAT 173488 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 |||||||||| ||||||||||||| Sbjct 173489 GCACCTGCTTCAGCACCTTGTAGA 173512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6105505784549568