Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq7604 134 1e-26 seq8631 125 6e-24 seq19881 111 1e-19 seq10545 109 5e-19 seq3620 84.2 2e-11 >seq7604 Length=1415154 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| | || || || || || || || |||||||| ||| Sbjct 1124636 ATGCAGATCTTTGTGAAAACCTTGACAGGCAAGACCATCACCCTAGAAGTAGAGCCCAGT 1124577 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || ||||| ||||||||||| || ||||| ||||| Sbjct 1124576 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCAGATCAG 1124517 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||| ||||| |||||||| || | | | | ||||||| || ||| Sbjct 1124516 CAGAGGTTGATCTTTGCTGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCAGACTACAAC 1124457 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || || ||||| || || |||||||| Sbjct 1124456 ATCCAGAAAGAATCCACTCTGCACTTGGT 1124428 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| | || || || || || || || |||||||| ||| Sbjct 1124864 ATGCAGATCTTTGTGAAAACCTTGACAGGCAAGACCATCACCCTAGAAGTAGAGCCCAGT 1124805 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || ||||| ||||||||||| || ||||| ||||| Sbjct 1124804 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCAGATCAG 1124745 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||| ||||| |||||||| || | | | | ||||||| || ||| Sbjct 1124744 CAGAGGTTGATCTTTGCTGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCAGACTACAAC 1124685 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || || ||||| || || ||| |||| |||| Sbjct 1124684 ATCCAGAAAGAATCCACTCTGCACCTGGTCCTGCG 1124650 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| | || || || || || || || |||||||| ||| Sbjct 1125092 ATGCAGATCTTTGTGAAAACCTTGACAGGCAAGACCATCACCCTAGAAGTAGAGCCCAGT 1125033 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || ||||| ||||||||||| || ||||| ||||| Sbjct 1125032 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCAGATCAG 1124973 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||| ||||| |||||||| || | | | | ||||||| || ||| Sbjct 1124972 CAGAGGTTGATCTTTGCTGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCAGACTACAAC 1124913 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || || ||||| || || ||| |||| |||| Sbjct 1124912 ATCCAGAAAGAATCCACTCTGCACCTGGTCCTGCG 1124878 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| | || || || || || || || |||||||| ||| Sbjct 1125320 ATGCAGATCTTTGTGAAAACCTTGACAGGCAAGACCATCACCCTAGAAGTAGAGCCCAGT 1125261 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || ||||| ||||||||||| || ||||| ||||| Sbjct 1125260 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCAGATCAG 1125201 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||| ||||| |||||||| || | | | | ||||||| || ||| Sbjct 1125200 CAGAGGTTGATCTTTGCTGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCAGACTACAAC 1125141 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || || ||||| || || ||| |||| |||| Sbjct 1125140 ATCCAGAAAGAATCCACTCTGCACCTGGTCCTGCG 1125106 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| | || || || || || || || |||||||| ||| Sbjct 1125548 ATGCAGATCTTTGTGAAAACCTTGACAGGCAAGACCATCACCCTAGAAGTAGAGCCCAGT 1125489 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || ||||| ||||||||||| || ||||| ||||| Sbjct 1125488 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCAGATCAG 1125429 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||| ||||| |||||||| || | | | | ||||||| || ||| Sbjct 1125428 CAGAGGTTGATCTTTGCTGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCAGACTACAAC 1125369 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || || ||||| || || ||| |||| |||| Sbjct 1125368 ATCCAGAAAGAATCCACTCTGCACCTGGTCCTGCG 1125334 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| | || || || || || || || |||||||| ||| Sbjct 1125776 ATGCAGATCTTTGTGAAAACCTTGACAGGCAAGACCATCACCCTAGAAGTAGAGCCCAGT 1125717 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || ||||| ||||||||||| || ||||| ||||| Sbjct 1125716 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCAGATCAG 1125657 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||| ||||| |||||||| || | | | | ||||||| || ||| Sbjct 1125656 CAGAGGTTGATCTTTGCTGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCAGACTACAAC 1125597 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || || ||||| || || ||| |||| |||| Sbjct 1125596 ATCCAGAAAGAATCCACTCTGCACCTGGTCCTGCG 1125562 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| | || || || || || || || |||||||| ||| Sbjct 1126004 ATGCAGATCTTTGTGAAAACCTTGACAGGCAAGACCATCACCCTAGAAGTAGAGCCCAGT 1125945 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || ||||| ||||||||||| || ||||| ||||| Sbjct 1125944 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCAGATCAG 1125885 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||| ||||| |||||||| || | | | | ||||||| || ||| Sbjct 1125884 CAGAGGTTGATCTTTGCTGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCAGACTACAAC 1125825 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || || ||||| || || ||| |||| |||| Sbjct 1125824 ATCCAGAAAGAATCCACTCTGCACCTGGTCCTGCG 1125790 >seq8631 Length=204 Score = 125 bits (138), Expect = 6e-24 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| | || || || || || || || |||||||| ||| Sbjct 1 ATGCAGATCTTTGTGAAAACCTTGACAGGCAAGACCATCACCCTAGAAGTAGAGCCCAGT 60 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || ||||| ||||||||||| || ||||| ||||| Sbjct 61 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCAGATCAG 120 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||| ||||| |||||||| || | | | | ||||||| || ||| Sbjct 121 CAGAGGTTGATCTTTGCTGGGAAGCAGCTGGAAGACGGGCGCACCCTGTCAGACTACAAC 180 Query 24884 ATTCAAAAGGAATCGACACTACAC 24907 || || || ||||| || || ||| Sbjct 181 ATCCAGAAAGAATCCACTCTGCAC 204 >seq19881 Length=10700766 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || |||||||||||| | || || || || || || || || || || || || ||| || Sbjct 10193689 ACCATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGAACCC 10193630 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||| | || | || ||| |||||||| ||||||||||| || || || || Sbjct 10193629 AGTGACACCATTGAGAACGTGAAAGCCAAGATCCAGGACAAAGAAGGCATCCCCCCTGAC 10193570 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || | |||||||||| || || |||||||| ||| | | | |||| || || Sbjct 10193569 CAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTAC 10193510 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| || ||||| || || || || | ||| |||| || | || ||| Sbjct 10193509 AACATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGTCTGAGAGGTGGC 10193459 Score = 109 bits (120), Expect = 5e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || |||||||||||| | || || || || || || || || || || || || ||| || Sbjct 10194942 ACCATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGAACCC 10194883 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||| | || | || ||| |||||||| ||||||||||| || || || || Sbjct 10194882 AGTGACACCATTGAGAACGTGAAAGCCAAGATCCAGGACAAAGAAGGCATCCCCCCTGAC 10194823 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || | |||||||||| || || |||||||| ||| | | | |||| || || Sbjct 10194822 CAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTAC 10194763 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||||| || ||||| || || || || | ||| |||| Sbjct 10194762 AACATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCG 10194725 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || || || || || ||| Sbjct 10194255 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTAGAGGTGGAGCCCAGT 10194196 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| |||||||| ||||||||||| || || || || || Sbjct 10194195 GACACCATTGAGAATGTGAAAGCCAAGATCCAGGACAAAGAAGGCATCCCCCCTGACCAG 10194136 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || || |||||||| ||| | | | |||| || || ||| Sbjct 10194135 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 10194076 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || ||||| || || || || | ||| |||| Sbjct 10194075 ATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCG 10194041 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || || || || || ||| Sbjct 10194483 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTAGAGGTGGAGCCCAGT 10194424 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| |||||||| ||||||||||| || || || || || Sbjct 10194423 GACACCATTGAGAATGTGAAAGCCAAGATCCAGGACAAAGAAGGCATCCCCCCTGACCAG 10194364 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || || |||||||| ||| | | | |||| || || ||| Sbjct 10194363 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 10194304 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || ||||| || || || || | ||| |||| Sbjct 10194303 ATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCG 10194269 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || || || || || ||| Sbjct 10194711 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTAGAGGTGGAGCCCAGT 10194652 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| |||||||| ||||||||||| || || || || || Sbjct 10194651 GACACCATTGAGAATGTGAAAGCCAAGATCCAGGACAAAGAAGGCATCCCCCCTGACCAG 10194592 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || || |||||||| ||| | | | |||| || || ||| Sbjct 10194591 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 10194532 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || ||||| || || || || | ||| |||| Sbjct 10194531 ATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCG 10194497 >seq10545 Length=227 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || || || || ||| ||| Sbjct 1 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGAACCCAGT 60 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| |||||||| ||||||||||| || || || || || Sbjct 61 GACACCATTGAGAACGTGAAAGCCAAGATCCAGGACAAAGAAGGCATCCCCCCTGACCAG 120 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || || |||||||| ||| | | | |||| || || ||| Sbjct 121 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 180 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || ||||| || || || || | ||| |||| Sbjct 181 ATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCG 215 >seq3620 Length=164711 Score = 84.2 bits (92), Expect = 2e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 138741 GCCTTCGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGC 138800 ||||||||| | || ||| ||| |||||| ||| | ||| ||| | || | || Sbjct 106129 GCCTTCGTAAGTTTCATATGGCCCATACTCTTTCGCAAGTTCGCAGCTGGATTCCAAAGC 106188 Query 138801 ACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTA 138860 ||| || ||||| || || ||||||||| || ||||| ||||||||| ||| || | Sbjct 106189 ACCGTAATAAATGGTCTCAAAAATCTGCTGGTTCAGCAACTGGGCCTCGGGGCTTTCAAA 106248 Query 138861 CGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCG 138920 || | | || ||||||| || ||||| |||||||| || | || | ||||| Sbjct 106249 GGGGTATCTCATCAGGATGAACGCATCTGCCAGACCTTGCACCCCAATGCCAATGGGGCG 106308 Query 138921 ATGGCG 138926 |||||| Sbjct 106309 ATGGCG 106314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449785665477120