Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq5530 192 9e-43 seq7826 123 4e-22 seq4667 111 2e-18 seq5657 87.8 3e-11 seq4256 87.8 3e-11 >seq5530 Length=105988 Score = 192 bits (212), Expect = 9e-43 Identities = 189/244 (77%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| || |||||||| |||||||| || ||||||||| |||||||||| ||| ||| Sbjct 18533 TGTACTTAGTCACGGCCTTAGTACCCTCAGACACGGCGTGCTTGGCCAGTTCCCCGGGCA 18592 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||||||||||||||| |||| | ||| || ||||||||| | Sbjct 18593 GCAGCAGCCGCACGGCGGTCTGGATCTCCCGGGAGGTGATGGTCGAGCGCTTGTTGTAGT 18652 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||| |||||| || || | ||||| |||| |||||||| ||||||||||||| Sbjct 18653 GCGCTAGGCGGGACGCTTCCCCAGCAATGCGCTCGAAGATGTCGTTCACAAACGAGTTCA 18712 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | || ||| || || |||||||||||||||||| |||||||||| Sbjct 18713 TGATGCCCATGGCCTTAGAGGAAATACCGGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 18772 Query 1485710 AAAC 1485713 | || Sbjct 18773 ACAC 18776 Score = 179 bits (198), Expect = 6e-39 Identities = 186/244 (76%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| || |||||||| |||||||| || ||||||||| | ||||| || || ||| Sbjct 27585 TGTACTTAGTCACGGCCTTAGTACCCTCAGACACGGCGTGCTTAGCCAGCTCCCCAGGCA 27644 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||||||||||||||| |||| | ||| || ||||||||| | Sbjct 27645 GCAGCAGCCGCACGGCGGTCTGGATCTCCCGGGAGGTGATGGTCGAGCGCTTGTTGTAGT 27704 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||| |||||| || || | ||||| |||| |||||||| ||||||||||||| Sbjct 27705 GCGCTAGGCGGGACGCTTCCCCAGCAATGCGCTCGAAGATGTCGTTCACAAACGAGTTCA 27764 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | || ||| || || |||||||||||||||||| |||||||||| Sbjct 27765 TGATGCCCATGGCCTTAGAGGAAATACCGGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 27824 Query 1485710 AAAC 1485713 | || Sbjct 27825 ACAC 27828 Score = 174 bits (192), Expect = 2e-37 Identities = 185/244 (76%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| || ||||||||||| |||||||| || ||||||||| | ||||| || || ||| Sbjct 73543 TGTATTTAGTGACGGCCTTAGTACCCTCAGACACGGCGTGCTTAGCCAGCTCCCCAGGCA 73484 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||||||||||||||| |||| | ||| || ||| ||||| | Sbjct 73483 GCAGCAGCCGCACGGCGGTCTGGATCTCCCGGGAGGTGATGGTCGAGCGTTTGTTGTAGT 73424 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||||||| ||||| | ||||| |||| ||||| ||||| || ||||||| Sbjct 73423 GCGCCAGGCGGGACGCCTCCCCAGCAATGCGCTCGAAGATGTCATTGACGAAGGAGTTCA 73364 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | || ||| || || |||||||||||||||||| |||||||||| Sbjct 73363 TGATGCCCATGGCCTTAGAGGAAATACCGGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 73304 Query 1485710 AAAC 1485713 | || Sbjct 73303 ACAC 73300 Score = 174 bits (192), Expect = 2e-37 Identities = 185/244 (76%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| | ||||| || || ||| Sbjct 81473 TGTACTTGGTGACAGCCTTGGTGCCCTCAGACACGGCGTGCTTAGCCAGCTCTCCAGGCA 81414 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||||||| |||||||||||||| |||| | ||| || ||||||||| | Sbjct 81413 GCAGCAGGCGCACAGCGGTCTGGATCTCCCGGGAGGTGATGGTCGAGCGCTTGTTGTAGT 81354 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||| |||||| || || | ||||| |||| |||||||| ||||||||||||| Sbjct 81353 GCGCTAGGCGGGACGCTTCCCCAGCAATGCGCTCGAAGATGTCGTTCACAAACGAGTTCA 81294 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | || ||| || || ||| ||||| |||||||| |||||||||| Sbjct 81293 TGATGCCCATGGCCTTAGAGGAAATACCGGTGTCAGGGTGAACCTGCTTCAGCACCTTGT 81234 Query 1485710 AAAC 1485713 | || Sbjct 81233 ACAC 81230 >seq7826 Length=213159 Score = 123 bits (136), Expect = 4e-22 Identities = 176/245 (72%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| |||||||| ||||| || || || || || |||||| |||||| || ||| ||| Sbjct 173270 TGTATTTGGTGACAGCCTTTGTGCCTTCCGACACCGCGTGCTTGGCCAACTCCCCGGGCA 173329 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||||||||||||||||||| || || | | ||| || |||||||| || | Sbjct 173330 GCAGCAGGCGCACGGCGGTCTGGATTTCTCGCGAACTGATGGTCGATCGCTTGTT-GTAC 173388 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 |||| ||| ||||||| | ||||| |||| | ||| | || || || ||| Sbjct 173389 AAAGCCAAGCGTGACGCCTCGGCAGCAATGCGCTCGAAGAGATCGCTCACGAAAGAATTC 173448 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||| | || || || ||| ||| || ||||||||||| ||||||||| Sbjct 173449 ATGATGCTCATGGCCTTAGAAGAAATACCCGTGTCTGGATGCACCTGCTTCAGCACCTTG 173508 Query 1485709 TAAAC 1485713 || || Sbjct 173509 TAGAC 173513 >seq4667 Length=1791408 Score = 111 bits (122), Expect = 2e-18 Identities = 177/254 (70%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531 ||||||||||| ||||| || ||||| || || || || ||||||| || || ||| Sbjct 1596030 TACTTGGTGACAGCCTTAGTGCCCTCAGACACCGCATGTTTGGCCAGCTCCCCCGGCAGA 1596089 Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGC 1485591 | ||| ||||| || ||||||||||| |||| ||| || |||||| ||| | Sbjct 1596090 AGCAGACGCACTGCAGTCTGGATCTCACGGGAAGTGATGGTTGAGCGCTTATTATAATGA 1596149 Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 |||| ||| ||| || | ||||| |||| ||||| || ||||| ||||||||| Sbjct 1596150 GCCAAGCGAGAGGCTTCCCCCGCAATGCGCTCGAAAATGTCATTTACAAAGGAGTTCATG 1596209 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAA 1485711 || ||| | ||| || || || ||| ||||| || || || ||||| || || Sbjct 1596210 ATGCCCATGGCCTTGGAAGAAATACCGGTGTCTGGGTGAACTTGTTTCAGCACTTTATAC 1596269 Query 1485712 ACAAAGGACGAGTA 1485725 ||| || ||||| Sbjct 1596270 ACATAGATAGAGTA 1596283 Score = 91.5 bits (100), Expect = 2e-12 Identities = 169/246 (69%), Gaps = 4/246 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || ||||| |||||||| || || || || | ||||| || || | | Sbjct 1760077 TGTACTTGGTAACAGCCTTAGTACCCTCAGATACAGCATGTTTAGCCAGCTCTCCTGGTA 1760018 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT 1485587 | |||||||| || |||||||| || || | ||| || ||| ||||| ||| Sbjct 1760017 GTAGTAGGCGCACAGCAGTCTGGATTTCCCGTGAAGTGATAGTTGAGCGTTTGTTGTAGT 1759958 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 |||| | | | | || || |||| || || | ||||| || ||||| ||||| Sbjct 1759957 GCGCTAAACGAGAC--GCTTCCCCAGCGATTCGCTCAAATATGTCATTTACAAAGGAGTT 1759900 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||| ||| | ||| || ||||| ||| || || || ||||| ||||| || Sbjct 1759899 CATGATACCCATGGCTTTCGAAGAAATGCCGGTGTCTGGATGAACTTGCTTCAGCACTTT 1759840 Query 1485708 GTAAAC 1485713 ||| || Sbjct 1759839 GTATAC 1759834 >seq5657 Length=139505 Score = 87.8 bits (96), Expect = 3e-11 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 1485567 GATCGTGTTGCGCTTGTTAGTGC-GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGA 1485625 ||| ||| ||||||||| || | |||||||||| |||||| ||| ||||||| || | Sbjct 84297 GATGGTGGAGCGCTTGTT-GTACTGCGCCAGGCGCGAGGCCTCCGTGGCGATGCGCTCAA 84355 Query 1485626 TCATGTCGTTGACAAACGAGTTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGG 1485685 | |||||| ||||| ||||||||||| ||| | ||| ||||||||| ||| | Sbjct 84356 AGACGTCGTTCACAAAGGAGTTCATGATGCTCATGGCTTTCGAGGAGATGCCAGTGTCAG 84415 Query 1485686 GGTGCACCTG 1485695 |||| ||||| Sbjct 84416 GGTGAACCTG 84425 Score = 87.8 bits (96), Expect = 3e-11 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 1485567 GATCGTGTTGCGCTTGTTAGTGC-GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGA 1485625 ||| ||| ||||||||| || | |||||||||| |||||| ||| ||||||| || | Sbjct 84497 GATGGTGGAGCGCTTGTT-GTACTGCGCCAGGCGCGAGGCCTCCGTGGCGATGCGCTCAA 84555 Query 1485626 TCATGTCGTTGACAAACGAGTTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGG 1485685 | |||||| ||||| ||||||||||| ||| | ||| ||||||||| ||| | Sbjct 84556 AGACGTCGTTCACAAAGGAGTTCATGATGCTCATGGCTTTCGAGGAGATGCCAGTGTCAG 84615 Query 1485686 GGTGCACCTG 1485695 |||| ||||| Sbjct 84616 GGTGAACCTG 84625 >seq4256 Length=2845976 Score = 87.8 bits (96), Expect = 3e-11 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 796303 ACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGG 796362 ||||| || || ||||| ||||||||||| || || || ||||| | ||| || ||| Sbjct 152272 ACCTCTTCAGCTGTCCAGAAGGAGGCCTCTGCTTTCTTATACATTTGCCAGATATCATGG 152331 Query 796363 TAGCGGATGGGGAACAGAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 || ||||||||||| | ||||| || | ||| ||||| ||||| || ||||| Sbjct 152332 TACCGGATGGGGAAGATGACAAACCGGTGGGGATTCTCCCGTAGGAGTGGCTC 152384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7914129120737856